FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630292_a_at:

>probe:Drosophila_2:1630292_a_at:707:377; Interrogation_Position=1019; Antisense; GAAGCTCACCCAGCTGCAGATGCAG
>probe:Drosophila_2:1630292_a_at:421:325; Interrogation_Position=1165; Antisense; GCGAGCTGGCTGGACGCAGATCCTC
>probe:Drosophila_2:1630292_a_at:451:587; Interrogation_Position=1175; Antisense; TGGACGCAGATCCTCCGAGGGCACA
>probe:Drosophila_2:1630292_a_at:193:103; Interrogation_Position=1219; Antisense; CAACGAACTCCGAGGGACAGGCGCT
>probe:Drosophila_2:1630292_a_at:398:629; Interrogation_Position=1251; Antisense; TCCACAGCCTCATCTAGTCAGAATG
>probe:Drosophila_2:1630292_a_at:490:125; Interrogation_Position=1256; Antisense; AGCCTCATCTAGTCAGAATGCCACC
>probe:Drosophila_2:1630292_a_at:86:127; Interrogation_Position=1364; Antisense; ACCAGCCGCCCTTGGAATGGCCGTG
>probe:Drosophila_2:1630292_a_at:393:115; Interrogation_Position=1396; Antisense; AGCAGGCCCAGCATCAGGAGAAGCT
>probe:Drosophila_2:1630292_a_at:100:207; Interrogation_Position=1416; Antisense; AAGCTGCTCAGCCATCCGGCCTTGG
>probe:Drosophila_2:1630292_a_at:86:43; Interrogation_Position=1429; Antisense; ATCCGGCCTTGGATTCGCGACGGGA
>probe:Drosophila_2:1630292_a_at:436:463; Interrogation_Position=1440; Antisense; GATTCGCGACGGGAGTTCGACGTCA
>probe:Drosophila_2:1630292_a_at:661:425; Interrogation_Position=1452; Antisense; GAGTTCGACGTCAGCAAAGTGAATC
>probe:Drosophila_2:1630292_a_at:237:545; Interrogation_Position=980; Antisense; GGATCAGCATCGCAGATCCTCGTTG
>probe:Drosophila_2:1630292_a_at:306:265; Interrogation_Position=992; Antisense; CAGATCCTCGTTGCAGGGTGTGCAG

Paste this into a BLAST search page for me
GAAGCTCACCCAGCTGCAGATGCAGGCGAGCTGGCTGGACGCAGATCCTCTGGACGCAGATCCTCCGAGGGCACACAACGAACTCCGAGGGACAGGCGCTTCCACAGCCTCATCTAGTCAGAATGAGCCTCATCTAGTCAGAATGCCACCACCAGCCGCCCTTGGAATGGCCGTGAGCAGGCCCAGCATCAGGAGAAGCTAAGCTGCTCAGCCATCCGGCCTTGGATCCGGCCTTGGATTCGCGACGGGAGATTCGCGACGGGAGTTCGACGTCAGAGTTCGACGTCAGCAAAGTGAATCGGATCAGCATCGCAGATCCTCGTTGCAGATCCTCGTTGCAGGGTGTGCAG

Full Affymetrix probeset data:

Annotations for 1630292_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720