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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630429_s_at:

>probe:Drosophila_2:1630429_s_at:25:599; Interrogation_Position=2339; Antisense; TGTTCCCGGTGACTTTTTGACCCTG
>probe:Drosophila_2:1630429_s_at:570:529; Interrogation_Position=2371; Antisense; GGGATCTCTGGACCACCAATATTAT
>probe:Drosophila_2:1630429_s_at:205:559; Interrogation_Position=2415; Antisense; GGACATCCCATAAATGCCATCTTTA
>probe:Drosophila_2:1630429_s_at:586:313; Interrogation_Position=2430; Antisense; GCCATCTTTATCGACTTTCAGTTCA
>probe:Drosophila_2:1630429_s_at:349:93; Interrogation_Position=2449; Antisense; AGTTCAGTGCTTGGAACTCGCCGGC
>probe:Drosophila_2:1630429_s_at:346:445; Interrogation_Position=2478; Antisense; GATCTACACTACTTCTTTTCAACGG
>probe:Drosophila_2:1630429_s_at:297:579; Interrogation_Position=2501; Antisense; GGCCTTGCAGGCTGATATTCGACTG
>probe:Drosophila_2:1630429_s_at:329:415; Interrogation_Position=2538; Antisense; GAGCTGGTCCAGTTCTACTATTACA
>probe:Drosophila_2:1630429_s_at:577:393; Interrogation_Position=2599; Antisense; GAAATGTTCCGAGCCTATTCGTCTT
>probe:Drosophila_2:1630429_s_at:50:689; Interrogation_Position=2614; Antisense; TATTCGTCTTCCATCAGCAGTTCAG
>probe:Drosophila_2:1630429_s_at:643:73; Interrogation_Position=2637; Antisense; AGGAACAGATCCTTCTATGCTGCCT
>probe:Drosophila_2:1630429_s_at:613:627; Interrogation_Position=2657; Antisense; TGCCTTCGCATCACTGATCTTTGAA
>probe:Drosophila_2:1630429_s_at:528:179; Interrogation_Position=2793; Antisense; AAAAAGATGCGTCTCACTTTGCCCT
>probe:Drosophila_2:1630429_s_at:16:149; Interrogation_Position=2808; Antisense; ACTTTGCCCTTTCTTGATCATTTGG

Paste this into a BLAST search page for me
TGTTCCCGGTGACTTTTTGACCCTGGGGATCTCTGGACCACCAATATTATGGACATCCCATAAATGCCATCTTTAGCCATCTTTATCGACTTTCAGTTCAAGTTCAGTGCTTGGAACTCGCCGGCGATCTACACTACTTCTTTTCAACGGGGCCTTGCAGGCTGATATTCGACTGGAGCTGGTCCAGTTCTACTATTACAGAAATGTTCCGAGCCTATTCGTCTTTATTCGTCTTCCATCAGCAGTTCAGAGGAACAGATCCTTCTATGCTGCCTTGCCTTCGCATCACTGATCTTTGAAAAAAAGATGCGTCTCACTTTGCCCTACTTTGCCCTTTCTTGATCATTTGG

Full Affymetrix probeset data:

Annotations for 1630429_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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