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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630430_a_at:

>probe:Drosophila_2:1630430_a_at:642:451; Interrogation_Position=3011; Antisense; GATCTTCATATGCAACTATTTTCAA
>probe:Drosophila_2:1630430_a_at:34:279; Interrogation_Position=3026; Antisense; CTATTTTCAAATACAGTTGCGTTCA
>probe:Drosophila_2:1630430_a_at:65:93; Interrogation_Position=3100; Antisense; AGTTTTTTCACGACTATGCTATCGA
>probe:Drosophila_2:1630430_a_at:77:405; Interrogation_Position=3111; Antisense; GACTATGCTATCGATATAATTTCTT
>probe:Drosophila_2:1630430_a_at:80:23; Interrogation_Position=3260; Antisense; ATATCTTTTTATTTTACGTCATCAA
>probe:Drosophila_2:1630430_a_at:483:671; Interrogation_Position=3274; Antisense; TACGTCATCAATTGCTACTTAAACA
>probe:Drosophila_2:1630430_a_at:97:505; Interrogation_Position=3343; Antisense; GTCCTTTTGATTATTGTGACAGCAA
>probe:Drosophila_2:1630430_a_at:552:459; Interrogation_Position=3372; Antisense; GATTTGCATACAAGTATACCTGTCA
>probe:Drosophila_2:1630430_a_at:670:481; Interrogation_Position=3385; Antisense; GTATACCTGTCATTATGGTGCCTTA
>probe:Drosophila_2:1630430_a_at:691:679; Interrogation_Position=3398; Antisense; TATGGTGCCTTATCGTTCAATCCTG
>probe:Drosophila_2:1630430_a_at:715:39; Interrogation_Position=3409; Antisense; ATCGTTCAATCCTGGGTACACTTAA
>probe:Drosophila_2:1630430_a_at:668:697; Interrogation_Position=3439; Antisense; TTTTGTGTTTGTATCTTACGCCCAA
>probe:Drosophila_2:1630430_a_at:513:479; Interrogation_Position=3445; Antisense; GTTTGTATCTTACGCCCAAAATTGT
>probe:Drosophila_2:1630430_a_at:608:337; Interrogation_Position=3496; Antisense; GCTCACAATGAAAAAACCCCTTAAT

Paste this into a BLAST search page for me
GATCTTCATATGCAACTATTTTCAACTATTTTCAAATACAGTTGCGTTCAAGTTTTTTCACGACTATGCTATCGAGACTATGCTATCGATATAATTTCTTATATCTTTTTATTTTACGTCATCAATACGTCATCAATTGCTACTTAAACAGTCCTTTTGATTATTGTGACAGCAAGATTTGCATACAAGTATACCTGTCAGTATACCTGTCATTATGGTGCCTTATATGGTGCCTTATCGTTCAATCCTGATCGTTCAATCCTGGGTACACTTAATTTTGTGTTTGTATCTTACGCCCAAGTTTGTATCTTACGCCCAAAATTGTGCTCACAATGAAAAAACCCCTTAAT

Full Affymetrix probeset data:

Annotations for 1630430_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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