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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630436_at:

>probe:Drosophila_2:1630436_at:446:59; Interrogation_Position=13; Antisense; ATGTTTTGTGGTCGCAAGTGCTGTC
>probe:Drosophila_2:1630436_at:644:719; Interrogation_Position=148; Antisense; TTCCCCAGTCAGGAGGCCTTCAAGG
>probe:Drosophila_2:1630436_at:483:409; Interrogation_Position=181; Antisense; GACGAGGCCTACCAGGACGTGTCCA
>probe:Drosophila_2:1630436_at:367:407; Interrogation_Position=196; Antisense; GACGTGTCCACACGGTGCTTTGTAG
>probe:Drosophila_2:1630436_at:230:487; Interrogation_Position=217; Antisense; GTAGCCGCCGTTTTCTATCTGGGAT
>probe:Drosophila_2:1630436_at:225:645; Interrogation_Position=230; Antisense; TCTATCTGGGATTCGTCTTCATTGC
>probe:Drosophila_2:1630436_at:695:495; Interrogation_Position=244; Antisense; GTCTTCATTGCGATAGTGGCCATTC
>probe:Drosophila_2:1630436_at:236:679; Interrogation_Position=257; Antisense; TAGTGGCCATTCGTCGGGATAACAA
>probe:Drosophila_2:1630436_at:567:219; Interrogation_Position=28; Antisense; AAGTGCTGTCTGTTCTGCCTGTTCA
>probe:Drosophila_2:1630436_at:425:289; Interrogation_Position=312; Antisense; CGGTCACTTGCGATTCCGTCGTTGA
>probe:Drosophila_2:1630436_at:651:715; Interrogation_Position=40; Antisense; TTCTGCCTGTTCATGAGCGCCTGGG
>probe:Drosophila_2:1630436_at:209:525; Interrogation_Position=63; Antisense; GGGCTTCTTGATGCTGAATCTGCTG
>probe:Drosophila_2:1630436_at:160:367; Interrogation_Position=78; Antisense; GAATCTGCTGGGTATCTTCTTCTAC
>probe:Drosophila_2:1630436_at:105:715; Interrogation_Position=94; Antisense; TTCTTCTACGTCCAGTCACTGATGC

Paste this into a BLAST search page for me
ATGTTTTGTGGTCGCAAGTGCTGTCTTCCCCAGTCAGGAGGCCTTCAAGGGACGAGGCCTACCAGGACGTGTCCAGACGTGTCCACACGGTGCTTTGTAGGTAGCCGCCGTTTTCTATCTGGGATTCTATCTGGGATTCGTCTTCATTGCGTCTTCATTGCGATAGTGGCCATTCTAGTGGCCATTCGTCGGGATAACAAAAGTGCTGTCTGTTCTGCCTGTTCACGGTCACTTGCGATTCCGTCGTTGATTCTGCCTGTTCATGAGCGCCTGGGGGGCTTCTTGATGCTGAATCTGCTGGAATCTGCTGGGTATCTTCTTCTACTTCTTCTACGTCCAGTCACTGATGC

Full Affymetrix probeset data:

Annotations for 1630436_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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