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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630477_at:

>probe:Drosophila_2:1630477_at:640:585; Interrogation_Position=1724; Antisense; TGTAATTGTCGTTTTGGTTTCTTCA
>probe:Drosophila_2:1630477_at:218:599; Interrogation_Position=1730; Antisense; TGTCGTTTTGGTTTCTTCAACTACA
>probe:Drosophila_2:1630477_at:212:477; Interrogation_Position=1734; Antisense; GTTTTGGTTTCTTCAACTACACACT
>probe:Drosophila_2:1630477_at:443:539; Interrogation_Position=1739; Antisense; GGTTTCTTCAACTACACACTTTGTA
>probe:Drosophila_2:1630477_at:378:275; Interrogation_Position=1757; Antisense; CTTTGTAAACAACGCACTTCTATAA
>probe:Drosophila_2:1630477_at:231:183; Interrogation_Position=1782; Antisense; AAAAGTTTCCTAATGTGATCGTATA
>probe:Drosophila_2:1630477_at:223:451; Interrogation_Position=1798; Antisense; GATCGTATAATCGAATAATGCCTAT
>probe:Drosophila_2:1630477_at:223:43; Interrogation_Position=1807; Antisense; ATCGAATAATGCCTATAACTATATA
>probe:Drosophila_2:1630477_at:604:675; Interrogation_Position=1886; Antisense; TTGCTTAACCTAAGTTTTAGTTGAG
>probe:Drosophila_2:1630477_at:52:215; Interrogation_Position=1897; Antisense; AAGTTTTAGTTGAGTAGTACATGCT
>probe:Drosophila_2:1630477_at:655:485; Interrogation_Position=1910; Antisense; GTAGTACATGCTAGTATTTTTGTCA
>probe:Drosophila_2:1630477_at:693:339; Interrogation_Position=1919; Antisense; GCTAGTATTTTTGTCATGCCTTGTT
>probe:Drosophila_2:1630477_at:464:497; Interrogation_Position=1931; Antisense; GTCATGCCTTGTTTTTTGTGCTCAA
>probe:Drosophila_2:1630477_at:589:315; Interrogation_Position=1936; Antisense; GCCTTGTTTTTTGTGCTCAAATATA

Paste this into a BLAST search page for me
TGTAATTGTCGTTTTGGTTTCTTCATGTCGTTTTGGTTTCTTCAACTACAGTTTTGGTTTCTTCAACTACACACTGGTTTCTTCAACTACACACTTTGTACTTTGTAAACAACGCACTTCTATAAAAAAGTTTCCTAATGTGATCGTATAGATCGTATAATCGAATAATGCCTATATCGAATAATGCCTATAACTATATATTGCTTAACCTAAGTTTTAGTTGAGAAGTTTTAGTTGAGTAGTACATGCTGTAGTACATGCTAGTATTTTTGTCAGCTAGTATTTTTGTCATGCCTTGTTGTCATGCCTTGTTTTTTGTGCTCAAGCCTTGTTTTTTGTGCTCAAATATA

Full Affymetrix probeset data:

Annotations for 1630477_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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