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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630483_a_at:

>probe:Drosophila_2:1630483_a_at:55:609; Interrogation_Position=3879; Antisense; TGAGATGTCCGAAGTGACCGCCAGC
>probe:Drosophila_2:1630483_a_at:636:349; Interrogation_Position=3905; Antisense; GCAGCAACAGTTCACCGGCAGACGA
>probe:Drosophila_2:1630483_a_at:251:339; Interrogation_Position=3930; Antisense; GCTACCAGCTGTGATTGTGGGCTCA
>probe:Drosophila_2:1630483_a_at:135:585; Interrogation_Position=3961; Antisense; TGGCACATGAGTTTCCCCAATGATT
>probe:Drosophila_2:1630483_a_at:471:725; Interrogation_Position=3984; Antisense; TTGGTTGCCTGTGATAACGCGCGAC
>probe:Drosophila_2:1630483_a_at:203:569; Interrogation_Position=4020; Antisense; GGCAGAGCAGAGTAATCGTCCCCAG
>probe:Drosophila_2:1630483_a_at:83:389; Interrogation_Position=4108; Antisense; GAAAAGCCGACTGCCAGCGTGGAGT
>probe:Drosophila_2:1630483_a_at:453:263; Interrogation_Position=4122; Antisense; CAGCGTGGAGTGTCTCATTGCTAAT
>probe:Drosophila_2:1630483_a_at:319:101; Interrogation_Position=4154; Antisense; AGAGGGCTATCCAGAGCGTCGGCTT
>probe:Drosophila_2:1630483_a_at:278:519; Interrogation_Position=4193; Antisense; GTGGTAGCGCCTTAAACGCGTCGAT
>probe:Drosophila_2:1630483_a_at:702:493; Interrogation_Position=4231; Antisense; GTAATCGGATCCATTGCTCACGACT
>probe:Drosophila_2:1630483_a_at:176:485; Interrogation_Position=4341; Antisense; GTATCCGCAGATTGCCAAGTTCACC
>probe:Drosophila_2:1630483_a_at:545:453; Interrogation_Position=4384; Antisense; GATACGGAGACGGAAGCCTGGCCAC
>probe:Drosophila_2:1630483_a_at:60:581; Interrogation_Position=4402; Antisense; TGGCCACCTAATGCTTCTTGTACAT

Paste this into a BLAST search page for me
TGAGATGTCCGAAGTGACCGCCAGCGCAGCAACAGTTCACCGGCAGACGAGCTACCAGCTGTGATTGTGGGCTCATGGCACATGAGTTTCCCCAATGATTTTGGTTGCCTGTGATAACGCGCGACGGCAGAGCAGAGTAATCGTCCCCAGGAAAAGCCGACTGCCAGCGTGGAGTCAGCGTGGAGTGTCTCATTGCTAATAGAGGGCTATCCAGAGCGTCGGCTTGTGGTAGCGCCTTAAACGCGTCGATGTAATCGGATCCATTGCTCACGACTGTATCCGCAGATTGCCAAGTTCACCGATACGGAGACGGAAGCCTGGCCACTGGCCACCTAATGCTTCTTGTACAT

Full Affymetrix probeset data:

Annotations for 1630483_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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