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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630496_a_at:

>probe:Drosophila_2:1630496_a_at:39:185; Interrogation_Position=2856; Antisense; AACAGCCGGGAACAACGTGGACATT
>probe:Drosophila_2:1630496_a_at:560:401; Interrogation_Position=2875; Antisense; GACATTAACGTGGAGGATTTGACCC
>probe:Drosophila_2:1630496_a_at:368:319; Interrogation_Position=2901; Antisense; GCTGGTCACCCAGTTTACGAAGGAT
>probe:Drosophila_2:1630496_a_at:528:293; Interrogation_Position=2928; Antisense; CGAGCAGCTGGATAGTGATTACTTC
>probe:Drosophila_2:1630496_a_at:235:709; Interrogation_Position=2946; Antisense; TTACTTCAAATCTGTGCTGGCCACT
>probe:Drosophila_2:1630496_a_at:94:509; Interrogation_Position=2959; Antisense; GTGCTGGCCACTAGTGAGGCTTGAA
>probe:Drosophila_2:1630496_a_at:424:69; Interrogation_Position=2989; Antisense; GGTAGGGTCCAATAATTCTTAATCT
>probe:Drosophila_2:1630496_a_at:197:433; Interrogation_Position=3030; Antisense; GAGGCAGTTGTTCTACGTACTTATC
>probe:Drosophila_2:1630496_a_at:80:1; Interrogation_Position=3042; Antisense; CTACGTACTTATCACAACTTTTTTG
>probe:Drosophila_2:1630496_a_at:461:243; Interrogation_Position=3096; Antisense; AATATTGCTCATCCATGGTTACAAA
>probe:Drosophila_2:1630496_a_at:105:541; Interrogation_Position=3112; Antisense; GGTTACAAACCATATTCTCCTGATT
>probe:Drosophila_2:1630496_a_at:166:459; Interrogation_Position=3133; Antisense; GATTTGATTACAAGGCTACATCGAA
>probe:Drosophila_2:1630496_a_at:352:147; Interrogation_Position=3246; Antisense; ACTAATGCGAGTGTTCATACACCAT
>probe:Drosophila_2:1630496_a_at:663:29; Interrogation_Position=3427; Antisense; ATAAACTTCATGTTCCACAACCGTC

Paste this into a BLAST search page for me
AACAGCCGGGAACAACGTGGACATTGACATTAACGTGGAGGATTTGACCCGCTGGTCACCCAGTTTACGAAGGATCGAGCAGCTGGATAGTGATTACTTCTTACTTCAAATCTGTGCTGGCCACTGTGCTGGCCACTAGTGAGGCTTGAAGGTAGGGTCCAATAATTCTTAATCTGAGGCAGTTGTTCTACGTACTTATCCTACGTACTTATCACAACTTTTTTGAATATTGCTCATCCATGGTTACAAAGGTTACAAACCATATTCTCCTGATTGATTTGATTACAAGGCTACATCGAAACTAATGCGAGTGTTCATACACCATATAAACTTCATGTTCCACAACCGTC

Full Affymetrix probeset data:

Annotations for 1630496_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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