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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630515_s_at:

>probe:Drosophila_2:1630515_s_at:408:383; Interrogation_Position=2845; Antisense; GAACGTGATCGAATCTATGCCGAGG
>probe:Drosophila_2:1630515_s_at:663:511; Interrogation_Position=2879; Antisense; GTGAGCGACAGCAGCAAGAAACATT
>probe:Drosophila_2:1630515_s_at:382:387; Interrogation_Position=2911; Antisense; GAAAATCAACAGCATCCCGAACAAA
>probe:Drosophila_2:1630515_s_at:323:345; Interrogation_Position=2922; Antisense; GCATCCCGAACAAAGTTTGCCAGAG
>probe:Drosophila_2:1630515_s_at:17:671; Interrogation_Position=2968; Antisense; TACGAAGCCTACGATGGCGACCGCA
>probe:Drosophila_2:1630515_s_at:305:295; Interrogation_Position=3015; Antisense; CGAGCAACAGCGAAGGGATCAGGTT
>probe:Drosophila_2:1630515_s_at:269:99; Interrogation_Position=3051; Antisense; AGAGGAACAGCCTGACGAGGACCAA
>probe:Drosophila_2:1630515_s_at:282:549; Interrogation_Position=3078; Antisense; GGAGGAGTACGAGAGATCACCAGAT
>probe:Drosophila_2:1630515_s_at:612:279; Interrogation_Position=3130; Antisense; CTCAAGGTTGAGGATTTCCCCAGCT
>probe:Drosophila_2:1630515_s_at:699:77; Interrogation_Position=3140; Antisense; AGGATTTCCCCAGCTATGAGGCTTA
>probe:Drosophila_2:1630515_s_at:662:117; Interrogation_Position=3151; Antisense; AGCTATGAGGCTTACCTGGAGGCCG
>probe:Drosophila_2:1630515_s_at:291:359; Interrogation_Position=3175; Antisense; GCAACCAAGCTTCGCGAGGAGCAAG
>probe:Drosophila_2:1630515_s_at:600:525; Interrogation_Position=3219; Antisense; GGAGGAACGTTATAGGGCCCAACAG
>probe:Drosophila_2:1630515_s_at:377:517; Interrogation_Position=3272; Antisense; GGGAACGCAATTCTCGGAACTAAGT

Paste this into a BLAST search page for me
GAACGTGATCGAATCTATGCCGAGGGTGAGCGACAGCAGCAAGAAACATTGAAAATCAACAGCATCCCGAACAAAGCATCCCGAACAAAGTTTGCCAGAGTACGAAGCCTACGATGGCGACCGCACGAGCAACAGCGAAGGGATCAGGTTAGAGGAACAGCCTGACGAGGACCAAGGAGGAGTACGAGAGATCACCAGATCTCAAGGTTGAGGATTTCCCCAGCTAGGATTTCCCCAGCTATGAGGCTTAAGCTATGAGGCTTACCTGGAGGCCGGCAACCAAGCTTCGCGAGGAGCAAGGGAGGAACGTTATAGGGCCCAACAGGGGAACGCAATTCTCGGAACTAAGT

Full Affymetrix probeset data:

Annotations for 1630515_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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