FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630537_a_at:

>probe:Drosophila_2:1630537_a_at:221:451; Interrogation_Position=3425; Antisense; GATCTTGGACAAGGTCATTGCTCTC
>probe:Drosophila_2:1630537_a_at:653:495; Interrogation_Position=3438; Antisense; GTCATTGCTCTCTATCCGTACAAAG
>probe:Drosophila_2:1630537_a_at:412:23; Interrogation_Position=3499; Antisense; ATATCATTAGCGTTCTGGGTCGGGA
>probe:Drosophila_2:1630537_a_at:231:119; Interrogation_Position=3547; Antisense; AGCTGAATGGCCTTTCCGGTCTCTT
>probe:Drosophila_2:1630537_a_at:279:537; Interrogation_Position=3564; Antisense; GGTCTCTTCCCTAGCAACTATGTGG
>probe:Drosophila_2:1630537_a_at:153:635; Interrogation_Position=3595; Antisense; TCGTGACGTCCGGTAAGCCAGCAAA
>probe:Drosophila_2:1630537_a_at:663:641; Interrogation_Position=3646; Antisense; TCTCACATACCGATCCAGCTTAGCT
>probe:Drosophila_2:1630537_a_at:395:117; Interrogation_Position=3662; Antisense; AGCTTAGCTCTCTAGTTACCACATT
>probe:Drosophila_2:1630537_a_at:179:93; Interrogation_Position=3675; Antisense; AGTTACCACATTCCGTACACATATT
>probe:Drosophila_2:1630537_a_at:165:465; Interrogation_Position=3736; Antisense; GATTCCAATAAGTTCTCGCCTATTC
>probe:Drosophila_2:1630537_a_at:142:713; Interrogation_Position=3748; Antisense; TTCTCGCCTATTCTCGCTATTGAAA
>probe:Drosophila_2:1630537_a_at:317:301; Interrogation_Position=3775; Antisense; CCCACTTTAGTGTTTATTTGTTGCA
>probe:Drosophila_2:1630537_a_at:166:461; Interrogation_Position=3848; Antisense; GATTTACTCCTAAGCTTATCACTAG
>probe:Drosophila_2:1630537_a_at:46:703; Interrogation_Position=3863; Antisense; TTATCACTAGCGACCTCTCTATTTT

Paste this into a BLAST search page for me
GATCTTGGACAAGGTCATTGCTCTCGTCATTGCTCTCTATCCGTACAAAGATATCATTAGCGTTCTGGGTCGGGAAGCTGAATGGCCTTTCCGGTCTCTTGGTCTCTTCCCTAGCAACTATGTGGTCGTGACGTCCGGTAAGCCAGCAAATCTCACATACCGATCCAGCTTAGCTAGCTTAGCTCTCTAGTTACCACATTAGTTACCACATTCCGTACACATATTGATTCCAATAAGTTCTCGCCTATTCTTCTCGCCTATTCTCGCTATTGAAACCCACTTTAGTGTTTATTTGTTGCAGATTTACTCCTAAGCTTATCACTAGTTATCACTAGCGACCTCTCTATTTT

Full Affymetrix probeset data:

Annotations for 1630537_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720