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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630582_s_at:

>probe:Drosophila_2:1630582_s_at:544:653; Interrogation_Position=2042; Antisense; TAACACACCAAACGGTTCCTGTACT
>probe:Drosophila_2:1630582_s_at:431:541; Interrogation_Position=2055; Antisense; GGTTCCTGTACTTCAGTTCGATGAT
>probe:Drosophila_2:1630582_s_at:694:443; Interrogation_Position=2074; Antisense; GATGATTTCGTTGTGAGCTTCTTCT
>probe:Drosophila_2:1630582_s_at:232:115; Interrogation_Position=2089; Antisense; AGCTTCTTCTCCGACTTTTGTTGAT
>probe:Drosophila_2:1630582_s_at:171:693; Interrogation_Position=2121; Antisense; TTTGTTACAAGCCACGCACACCGAA
>probe:Drosophila_2:1630582_s_at:421:29; Interrogation_Position=2206; Antisense; ATACGTAGATTAATTGCCGCCGGTA
>probe:Drosophila_2:1630582_s_at:271:723; Interrogation_Position=2219; Antisense; TTGCCGCCGGTACTGAGCTAGATAA
>probe:Drosophila_2:1630582_s_at:344:155; Interrogation_Position=2251; Antisense; ACACATACTCGTCTTTGGTTGAAAA
>probe:Drosophila_2:1630582_s_at:137:489; Interrogation_Position=2301; Antisense; GTACTGTGAATTTGCAATAGCCCTT
>probe:Drosophila_2:1630582_s_at:587:239; Interrogation_Position=2316; Antisense; AATAGCCCTTAATGTTATCCAGCCC
>probe:Drosophila_2:1630582_s_at:42:125; Interrogation_Position=2336; Antisense; AGCCCGTGTGTATCTTCCAATTACA
>probe:Drosophila_2:1630582_s_at:224:165; Interrogation_Position=2382; Antisense; AAATCTATGCCGAGTACATGCTATA
>probe:Drosophila_2:1630582_s_at:612:321; Interrogation_Position=2413; Antisense; GCGCCAGTTGGCCAGAATGCATCTT
>probe:Drosophila_2:1630582_s_at:520:163; Interrogation_Position=2546; Antisense; AAATTTTGTCGACTCTATTTGCCAA

Paste this into a BLAST search page for me
TAACACACCAAACGGTTCCTGTACTGGTTCCTGTACTTCAGTTCGATGATGATGATTTCGTTGTGAGCTTCTTCTAGCTTCTTCTCCGACTTTTGTTGATTTTGTTACAAGCCACGCACACCGAAATACGTAGATTAATTGCCGCCGGTATTGCCGCCGGTACTGAGCTAGATAAACACATACTCGTCTTTGGTTGAAAAGTACTGTGAATTTGCAATAGCCCTTAATAGCCCTTAATGTTATCCAGCCCAGCCCGTGTGTATCTTCCAATTACAAAATCTATGCCGAGTACATGCTATAGCGCCAGTTGGCCAGAATGCATCTTAAATTTTGTCGACTCTATTTGCCAA

Full Affymetrix probeset data:

Annotations for 1630582_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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