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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630609_s_at:

>probe:Drosophila_2:1630609_s_at:516:213; Interrogation_Position=2888; Antisense; AATTTTTGCCAGAGGGATCCACCAC
>probe:Drosophila_2:1630609_s_at:541:99; Interrogation_Position=2898; Antisense; AGAGGGATCCACCACGCGAAAGGAT
>probe:Drosophila_2:1630609_s_at:144:393; Interrogation_Position=2915; Antisense; GAAAGGATACCAATCGCAAAGACAA
>probe:Drosophila_2:1630609_s_at:354:583; Interrogation_Position=3001; Antisense; TGGAAACGCTCCAAAACGGTCTCTT
>probe:Drosophila_2:1630609_s_at:682:255; Interrogation_Position=3012; Antisense; CAAAACGGTCTCTTTAGATCAGTAA
>probe:Drosophila_2:1630609_s_at:478:95; Interrogation_Position=3027; Antisense; AGATCAGTAAAAATCCCCTCTTGGA
>probe:Drosophila_2:1630609_s_at:145:279; Interrogation_Position=3044; Antisense; CTCTTGGATATACCCCTTGTTTTAT
>probe:Drosophila_2:1630609_s_at:313:291; Interrogation_Position=3113; Antisense; CGTGCATTAACTTCTATCGGGTCGA
>probe:Drosophila_2:1630609_s_at:111:683; Interrogation_Position=3127; Antisense; TATCGGGTCGAAACCTGCCAGTTCA
>probe:Drosophila_2:1630609_s_at:577:391; Interrogation_Position=3136; Antisense; GAAACCTGCCAGTTCATCTTTGCAC
>probe:Drosophila_2:1630609_s_at:366:471; Interrogation_Position=3147; Antisense; GTTCATCTTTGCACTCACCTAGTCA
>probe:Drosophila_2:1630609_s_at:56:651; Interrogation_Position=3173; Antisense; TCACCTGCTCATTCGATCAGCAAAG
>probe:Drosophila_2:1630609_s_at:359:35; Interrogation_Position=3188; Antisense; ATCAGCAAAGCGCTTGTGTTCGTTC
>probe:Drosophila_2:1630609_s_at:353:343; Interrogation_Position=3199; Antisense; GCTTGTGTTCGTTCGCCTTGAAAAA

Paste this into a BLAST search page for me
AATTTTTGCCAGAGGGATCCACCACAGAGGGATCCACCACGCGAAAGGATGAAAGGATACCAATCGCAAAGACAATGGAAACGCTCCAAAACGGTCTCTTCAAAACGGTCTCTTTAGATCAGTAAAGATCAGTAAAAATCCCCTCTTGGACTCTTGGATATACCCCTTGTTTTATCGTGCATTAACTTCTATCGGGTCGATATCGGGTCGAAACCTGCCAGTTCAGAAACCTGCCAGTTCATCTTTGCACGTTCATCTTTGCACTCACCTAGTCATCACCTGCTCATTCGATCAGCAAAGATCAGCAAAGCGCTTGTGTTCGTTCGCTTGTGTTCGTTCGCCTTGAAAAA

Full Affymetrix probeset data:

Annotations for 1630609_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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