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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630671_s_at:

>probe:Drosophila_2:1630671_s_at:431:267; Interrogation_Position=2680; Antisense; CAGTGCAGGCTTTGAAGGGTGCTTC
>probe:Drosophila_2:1630671_s_at:394:527; Interrogation_Position=2714; Antisense; GGTGCGCATTGGTGTGGCCAAACCA
>probe:Drosophila_2:1630671_s_at:570:625; Interrogation_Position=2740; Antisense; TGCCCATGACGGACAACTCACTGAA
>probe:Drosophila_2:1630671_s_at:334:145; Interrogation_Position=2755; Antisense; ACTCACTGAAGGCTTGCAGCAATGC
>probe:Drosophila_2:1630671_s_at:672:233; Interrogation_Position=2775; Antisense; AATGCGAGCACCACCAGCGAAGAGA
>probe:Drosophila_2:1630671_s_at:499:375; Interrogation_Position=2793; Antisense; GAAGAGACCTTGGACGCCCAGCCAT
>probe:Drosophila_2:1630671_s_at:253:269; Interrogation_Position=2870; Antisense; CATGGGAGCTGAGCCCGACCTGATT
>probe:Drosophila_2:1630671_s_at:689:129; Interrogation_Position=2887; Antisense; ACCTGATTCCCGACTGGCGGAACTA
>probe:Drosophila_2:1630671_s_at:7:365; Interrogation_Position=2930; Antisense; GAATTTCACACATTCCAGGCATTTG
>probe:Drosophila_2:1630671_s_at:234:33; Interrogation_Position=2980; Antisense; ATCAAACGCGGTTGCTAACTAATGG
>probe:Drosophila_2:1630671_s_at:703:197; Interrogation_Position=3057; Antisense; AACGATGTCAGAAACGATGCCAGAA
>probe:Drosophila_2:1630671_s_at:311:75; Interrogation_Position=3086; Antisense; AGGAGCGATTGTTATTACCGAAGCA
>probe:Drosophila_2:1630671_s_at:315:319; Interrogation_Position=3133; Antisense; GCCGAATTGTGTTTGTCCCCTGAAA
>probe:Drosophila_2:1630671_s_at:578:597; Interrogation_Position=3146; Antisense; TGTCCCCTGAAAACAAGCATTCCAC

Paste this into a BLAST search page for me
CAGTGCAGGCTTTGAAGGGTGCTTCGGTGCGCATTGGTGTGGCCAAACCATGCCCATGACGGACAACTCACTGAAACTCACTGAAGGCTTGCAGCAATGCAATGCGAGCACCACCAGCGAAGAGAGAAGAGACCTTGGACGCCCAGCCATCATGGGAGCTGAGCCCGACCTGATTACCTGATTCCCGACTGGCGGAACTAGAATTTCACACATTCCAGGCATTTGATCAAACGCGGTTGCTAACTAATGGAACGATGTCAGAAACGATGCCAGAAAGGAGCGATTGTTATTACCGAAGCAGCCGAATTGTGTTTGTCCCCTGAAATGTCCCCTGAAAACAAGCATTCCAC

Full Affymetrix probeset data:

Annotations for 1630671_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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