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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630696_at:

>probe:Drosophila_2:1630696_at:397:503; Interrogation_Position=1002; Antisense; GTCGCTGGCGACTACCGATGGAGAT
>probe:Drosophila_2:1630696_at:679:423; Interrogation_Position=1043; Antisense; GAGAAATCGCTCTTTCGGAACTGCC
>probe:Drosophila_2:1630696_at:525:639; Interrogation_Position=1057; Antisense; TCGGAACTGCCACCGGGAAGTATTT
>probe:Drosophila_2:1630696_at:225:387; Interrogation_Position=532; Antisense; GAAAATCCCTTGAACCAGGACCTGC
>probe:Drosophila_2:1630696_at:13:555; Interrogation_Position=549; Antisense; GGACCTGCCTGTCGAAGACATCATT
>probe:Drosophila_2:1630696_at:434:709; Interrogation_Position=581; Antisense; TTAAGCATGCACTGCCGAACTTCAT
>probe:Drosophila_2:1630696_at:554:461; Interrogation_Position=661; Antisense; GATTTTGTCAATCTCTCCAGCGAAA
>probe:Drosophila_2:1630696_at:316:483; Interrogation_Position=689; Antisense; GTATCATGTCCGATCATCCAGAGGG
>probe:Drosophila_2:1630696_at:265:395; Interrogation_Position=793; Antisense; GAAATACCTCTGCAGGCACATGGCG
>probe:Drosophila_2:1630696_at:627:133; Interrogation_Position=845; Antisense; ACGCTGGAACCAGTACTCTTCTGAA
>probe:Drosophila_2:1630696_at:624:527; Interrogation_Position=872; Antisense; GGGTTTTTCCGCATCTAGCCATTAT
>probe:Drosophila_2:1630696_at:388:3; Interrogation_Position=933; Antisense; ATTGGAACTTATCTCCCAGCTGGGA
>probe:Drosophila_2:1630696_at:1:113; Interrogation_Position=968; Antisense; AGCAACAGGCTGTTTCTGGAGCTTA
>probe:Drosophila_2:1630696_at:507:553; Interrogation_Position=985; Antisense; GGAGCTTATCATAACCTGTCGCTGG

Paste this into a BLAST search page for me
GTCGCTGGCGACTACCGATGGAGATGAGAAATCGCTCTTTCGGAACTGCCTCGGAACTGCCACCGGGAAGTATTTGAAAATCCCTTGAACCAGGACCTGCGGACCTGCCTGTCGAAGACATCATTTTAAGCATGCACTGCCGAACTTCATGATTTTGTCAATCTCTCCAGCGAAAGTATCATGTCCGATCATCCAGAGGGGAAATACCTCTGCAGGCACATGGCGACGCTGGAACCAGTACTCTTCTGAAGGGTTTTTCCGCATCTAGCCATTATATTGGAACTTATCTCCCAGCTGGGAAGCAACAGGCTGTTTCTGGAGCTTAGGAGCTTATCATAACCTGTCGCTGG

Full Affymetrix probeset data:

Annotations for 1630696_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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