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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630731_at:

>probe:Drosophila_2:1630731_at:543:563; Interrogation_Position=1307; Antisense; GGAAGATGCCCATCGCGATAAGCTT
>probe:Drosophila_2:1630731_at:372:455; Interrogation_Position=1323; Antisense; GATAAGCTTCTTCAGGAGTACGATA
>probe:Drosophila_2:1630731_at:516:429; Interrogation_Position=1338; Antisense; GAGTACGATAAACTGCAGGCCGAGT
>probe:Drosophila_2:1630731_at:558:69; Interrogation_Position=1354; Antisense; AGGCCGAGTTTGAAAAGCTGTCTGA
>probe:Drosophila_2:1630731_at:509:181; Interrogation_Position=1394; Antisense; AAAACGACTGCAAGCGGAGTCCCCG
>probe:Drosophila_2:1630731_at:92:557; Interrogation_Position=1420; Antisense; GGACTTCAGCTGCAATCAAACCCAC
>probe:Drosophila_2:1630731_at:432:697; Interrogation_Position=1450; Antisense; TTTCTCTAAGCAAACCCCAGCTATA
>probe:Drosophila_2:1630731_at:631:581; Interrogation_Position=1507; Antisense; TGGCCGCATTGCTGCGCATGGAAAT
>probe:Drosophila_2:1630731_at:247:349; Interrogation_Position=1522; Antisense; GCATGGAAATGTTCGGCGGCTCTGA
>probe:Drosophila_2:1630731_at:629:287; Interrogation_Position=1538; Antisense; CGGCTCTGAGGAACGCACTTGGAAG
>probe:Drosophila_2:1630731_at:657:425; Interrogation_Position=1573; Antisense; GAGAGTTTGCCACCGAACTACTTCA
>probe:Drosophila_2:1630731_at:46:191; Interrogation_Position=1588; Antisense; AACTACTTCAACTGGGCGACGAGGT
>probe:Drosophila_2:1630731_at:314:89; Interrogation_Position=1618; Antisense; AGTACTGTTGCGACGAGTGGCGCTT
>probe:Drosophila_2:1630731_at:292:447; Interrogation_Position=1655; Antisense; GATGCGGATTGCACGCTCCTGGCTG

Paste this into a BLAST search page for me
GGAAGATGCCCATCGCGATAAGCTTGATAAGCTTCTTCAGGAGTACGATAGAGTACGATAAACTGCAGGCCGAGTAGGCCGAGTTTGAAAAGCTGTCTGAAAAACGACTGCAAGCGGAGTCCCCGGGACTTCAGCTGCAATCAAACCCACTTTCTCTAAGCAAACCCCAGCTATATGGCCGCATTGCTGCGCATGGAAATGCATGGAAATGTTCGGCGGCTCTGACGGCTCTGAGGAACGCACTTGGAAGGAGAGTTTGCCACCGAACTACTTCAAACTACTTCAACTGGGCGACGAGGTAGTACTGTTGCGACGAGTGGCGCTTGATGCGGATTGCACGCTCCTGGCTG

Full Affymetrix probeset data:

Annotations for 1630731_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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