FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630772_at:

>probe:Drosophila_2:1630772_at:547:629; Interrogation_Position=2661; Antisense; TCCAGTTGGCAGTGGCATAGGAGCT
>probe:Drosophila_2:1630772_at:335:333; Interrogation_Position=2683; Antisense; GCTGGGATTGTGACTGGTTTTTCTT
>probe:Drosophila_2:1630772_at:7:477; Interrogation_Position=2699; Antisense; GTTTTTCTTAAGCATCCTTCCAACT
>probe:Drosophila_2:1630772_at:234:305; Interrogation_Position=2714; Antisense; CCTTCCAACTTCCAAATTCATCATG
>probe:Drosophila_2:1630772_at:174:613; Interrogation_Position=2737; Antisense; TGAAACTTGTATACGATTCGGCCAA
>probe:Drosophila_2:1630772_at:674:9; Interrogation_Position=2752; Antisense; ATTCGGCCAAAATCAACTCCATCAC
>probe:Drosophila_2:1630772_at:57:145; Interrogation_Position=2801; Antisense; ACTGCAATCCTACAGTTTCTGTGCT
>probe:Drosophila_2:1630772_at:24:715; Interrogation_Position=2817; Antisense; TTCTGTGCTATTTTCAACTGCCATA
>probe:Drosophila_2:1630772_at:267:493; Interrogation_Position=2854; Antisense; GTAATATCTAGATCAACTCAGGATT
>probe:Drosophila_2:1630772_at:269:255; Interrogation_Position=2972; Antisense; CACAGTTTTATTTTCTACTAGGAGC
>probe:Drosophila_2:1630772_at:627:595; Interrogation_Position=3088; Antisense; TGTGCTGTACATTTAAACGTATCAA
>probe:Drosophila_2:1630772_at:580:475; Interrogation_Position=3106; Antisense; GTATCAACATTTATCTAGGACGCTA
>probe:Drosophila_2:1630772_at:265:17; Interrogation_Position=3170; Antisense; ATTTTCTACTTCTTAGGCCAGCTGA
>probe:Drosophila_2:1630772_at:581:167; Interrogation_Position=3212; Antisense; AAATGCATGTACAATTCAACCAATA

Paste this into a BLAST search page for me
TCCAGTTGGCAGTGGCATAGGAGCTGCTGGGATTGTGACTGGTTTTTCTTGTTTTTCTTAAGCATCCTTCCAACTCCTTCCAACTTCCAAATTCATCATGTGAAACTTGTATACGATTCGGCCAAATTCGGCCAAAATCAACTCCATCACACTGCAATCCTACAGTTTCTGTGCTTTCTGTGCTATTTTCAACTGCCATAGTAATATCTAGATCAACTCAGGATTCACAGTTTTATTTTCTACTAGGAGCTGTGCTGTACATTTAAACGTATCAAGTATCAACATTTATCTAGGACGCTAATTTTCTACTTCTTAGGCCAGCTGAAAATGCATGTACAATTCAACCAATA

Full Affymetrix probeset data:

Annotations for 1630772_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720