FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630774_s_at:

>probe:Drosophila_2:1630774_s_at:374:599; Interrogation_Position=2275; Antisense; TGTCATTTTATTGCTGCCGCGCGTG
>probe:Drosophila_2:1630774_s_at:582:335; Interrogation_Position=2287; Antisense; GCTGCCGCGCGTGGCGATATATATA
>probe:Drosophila_2:1630774_s_at:649:709; Interrogation_Position=2336; Antisense; TTAATATTTTAAGTGATCCTCTCCG
>probe:Drosophila_2:1630774_s_at:541:279; Interrogation_Position=2356; Antisense; CTCCGCAACTCTCTTCGTTAATTAA
>probe:Drosophila_2:1630774_s_at:661:637; Interrogation_Position=2370; Antisense; TCGTTAATTAATGTATCCCTCCTAT
>probe:Drosophila_2:1630774_s_at:637:249; Interrogation_Position=2469; Antisense; CAACACCACCTTGATTTAGTACGTT
>probe:Drosophila_2:1630774_s_at:268:91; Interrogation_Position=2531; Antisense; AGTTTTGTGTGGTTAGAGCGAGCTA
>probe:Drosophila_2:1630774_s_at:267:417; Interrogation_Position=2546; Antisense; GAGCGAGCTAAGATCTAACTAACTA
>probe:Drosophila_2:1630774_s_at:270:181; Interrogation_Position=2587; Antisense; AAACAAGGCATGGTCTTGCAACAAC
>probe:Drosophila_2:1630774_s_at:134:645; Interrogation_Position=2600; Antisense; TCTTGCAACAACGTGCAGCATGCAG
>probe:Drosophila_2:1630774_s_at:193:53; Interrogation_Position=2619; Antisense; ATGCAGCATGCAACACACTCACACA
>probe:Drosophila_2:1630774_s_at:630:157; Interrogation_Position=2647; Antisense; ACACACACCACCCTAAGAAAGCAAG
>probe:Drosophila_2:1630774_s_at:583:389; Interrogation_Position=2760; Antisense; GAAACAAAGCAAAGCCCCGAGCATA
>probe:Drosophila_2:1630774_s_at:259:203; Interrogation_Position=2771; Antisense; AAGCCCCGAGCATAATGTTAATGTT

Paste this into a BLAST search page for me
TGTCATTTTATTGCTGCCGCGCGTGGCTGCCGCGCGTGGCGATATATATATTAATATTTTAAGTGATCCTCTCCGCTCCGCAACTCTCTTCGTTAATTAATCGTTAATTAATGTATCCCTCCTATCAACACCACCTTGATTTAGTACGTTAGTTTTGTGTGGTTAGAGCGAGCTAGAGCGAGCTAAGATCTAACTAACTAAAACAAGGCATGGTCTTGCAACAACTCTTGCAACAACGTGCAGCATGCAGATGCAGCATGCAACACACTCACACAACACACACCACCCTAAGAAAGCAAGGAAACAAAGCAAAGCCCCGAGCATAAAGCCCCGAGCATAATGTTAATGTT

Full Affymetrix probeset data:

Annotations for 1630774_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720