Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630876_at:

>probe:Drosophila_2:1630876_at:541:395; Interrogation_Position=122; Antisense; GAAATCGGTACTTCGCACAATCTAG
>probe:Drosophila_2:1630876_at:150:357; Interrogation_Position=136; Antisense; GCACAATCTAGCTCGAGTCGGTTCG
>probe:Drosophila_2:1630876_at:550:431; Interrogation_Position=150; Antisense; GAGTCGGTTCGAGTTGCTCATCAAT
>probe:Drosophila_2:1630876_at:445:409; Interrogation_Position=221; Antisense; GACGACTACTGGTCAATTCTCCGTT
>probe:Drosophila_2:1630876_at:212:237; Interrogation_Position=275; Antisense; AATCGCAATCAAAGTTCTCGTCGCC
>probe:Drosophila_2:1630876_at:364:35; Interrogation_Position=334; Antisense; ATCAGCGATGAGACTTTCCGGCGAG
>probe:Drosophila_2:1630876_at:633:145; Interrogation_Position=381; Antisense; ACTCCCTTGCTTGGAATCACCAGAA
>probe:Drosophila_2:1630876_at:413:383; Interrogation_Position=41; Antisense; GAACTCGGACCTCAGATCTTGGACT
>probe:Drosophila_2:1630876_at:717:397; Interrogation_Position=427; Antisense; GACACCCATTATTCAGGGACATGCT
>probe:Drosophila_2:1630876_at:390:527; Interrogation_Position=442; Antisense; GGGACATGCTTACGTTATGGAACCA
>probe:Drosophila_2:1630876_at:252:203; Interrogation_Position=462; Antisense; AACCAGGACATCTTGTACGGCTTCG
>probe:Drosophila_2:1630876_at:247:283; Interrogation_Position=527; Antisense; CTCCTTGATGTCGTCGGGATTCAGC
>probe:Drosophila_2:1630876_at:287:649; Interrogation_Position=547; Antisense; TCAGCGAGGAGCCAATCTTGAGCGT
>probe:Drosophila_2:1630876_at:83:729; Interrogation_Position=59; Antisense; TTGGACTCCCGAAAGCCCAGTGAAA

Paste this into a BLAST search page for me
GAAATCGGTACTTCGCACAATCTAGGCACAATCTAGCTCGAGTCGGTTCGGAGTCGGTTCGAGTTGCTCATCAATGACGACTACTGGTCAATTCTCCGTTAATCGCAATCAAAGTTCTCGTCGCCATCAGCGATGAGACTTTCCGGCGAGACTCCCTTGCTTGGAATCACCAGAAGAACTCGGACCTCAGATCTTGGACTGACACCCATTATTCAGGGACATGCTGGGACATGCTTACGTTATGGAACCAAACCAGGACATCTTGTACGGCTTCGCTCCTTGATGTCGTCGGGATTCAGCTCAGCGAGGAGCCAATCTTGAGCGTTTGGACTCCCGAAAGCCCAGTGAAA

Full Affymetrix probeset data:

Annotations for 1630876_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime