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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630877_a_at:

>probe:Drosophila_2:1630877_a_at:620:263; Interrogation_Position=1008; Antisense; CAGCTTTATGCTGGCCACTATAACC
>probe:Drosophila_2:1630877_a_at:4:301; Interrogation_Position=1032; Antisense; CCCCGATGACTATGTGGTTTCCAAG
>probe:Drosophila_2:1630877_a_at:138:337; Interrogation_Position=1065; Antisense; GCTGCCACAGCAGTTTGTCTTCAAT
>probe:Drosophila_2:1630877_a_at:553:117; Interrogation_Position=1090; Antisense; AGCTATCTGAGTGCTGGCATTCTTT
>probe:Drosophila_2:1630877_a_at:693:569; Interrogation_Position=1105; Antisense; GGCATTCTTTGCCTAATTGTCATCG
>probe:Drosophila_2:1630877_a_at:240:729; Interrogation_Position=1121; Antisense; TTGTCATCGGGTTCCAGCTACGAAA
>probe:Drosophila_2:1630877_a_at:133:87; Interrogation_Position=1166; Antisense; AGTCGTCGGCTGTAGATCATCGGAA
>probe:Drosophila_2:1630877_a_at:269:457; Interrogation_Position=1209; Antisense; GATACGCCAGATTCCAGACTCAGAT
>probe:Drosophila_2:1630877_a_at:32:97; Interrogation_Position=1237; Antisense; AGATCCAGATCCAGACAGAGGTCAT
>probe:Drosophila_2:1630877_a_at:593:495; Interrogation_Position=1257; Antisense; GTCATATCATTCCTGCTGCTTTGCA
>probe:Drosophila_2:1630877_a_at:652:335; Interrogation_Position=1271; Antisense; GCTGCTTTGCAACCGCTTAACTATA
>probe:Drosophila_2:1630877_a_at:664:423; Interrogation_Position=1388; Antisense; GAGACACAGTCTGCTGACTACAAAT
>probe:Drosophila_2:1630877_a_at:307:647; Interrogation_Position=918; Antisense; TCATTCACATCACTTCTGTCACAGT
>probe:Drosophila_2:1630877_a_at:729:521; Interrogation_Position=973; Antisense; GTGGCCTCATTCAGCTGGCGAAACA

Paste this into a BLAST search page for me
CAGCTTTATGCTGGCCACTATAACCCCCCGATGACTATGTGGTTTCCAAGGCTGCCACAGCAGTTTGTCTTCAATAGCTATCTGAGTGCTGGCATTCTTTGGCATTCTTTGCCTAATTGTCATCGTTGTCATCGGGTTCCAGCTACGAAAAGTCGTCGGCTGTAGATCATCGGAAGATACGCCAGATTCCAGACTCAGATAGATCCAGATCCAGACAGAGGTCATGTCATATCATTCCTGCTGCTTTGCAGCTGCTTTGCAACCGCTTAACTATAGAGACACAGTCTGCTGACTACAAATTCATTCACATCACTTCTGTCACAGTGTGGCCTCATTCAGCTGGCGAAACA

Full Affymetrix probeset data:

Annotations for 1630877_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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