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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630907_at:

>probe:Drosophila_2:1630907_at:123:497; Interrogation_Position=100; Antisense; GTCAGCATGTGTGGCCATTTGTTTT
>probe:Drosophila_2:1630907_at:166:701; Interrogation_Position=121; Antisense; TTTTGCTGGCCATGTCTGTACCAAT
>probe:Drosophila_2:1630907_at:433:59; Interrogation_Position=13; Antisense; ATGTCGGCTGATACTTTCGTAATGG
>probe:Drosophila_2:1630907_at:166:409; Interrogation_Position=153; Antisense; GACGAAACCCGATCACACAGTGTGT
>probe:Drosophila_2:1630907_at:707:257; Interrogation_Position=166; Antisense; CACACAGTGTGTCCCGTTTGCAAGT
>probe:Drosophila_2:1630907_at:318:491; Interrogation_Position=211; Antisense; GTAATACCGGTGTACGCACGAAATG
>probe:Drosophila_2:1630907_at:488:555; Interrogation_Position=319; Antisense; GGACTATTTTCGTACTTGCTTTTTG
>probe:Drosophila_2:1630907_at:204:589; Interrogation_Position=342; Antisense; TGGTTTATTCTTTCCATATGGTGCC
>probe:Drosophila_2:1630907_at:604:535; Interrogation_Position=361; Antisense; GGTGCCCTATCATCTTATCTGGATA
>probe:Drosophila_2:1630907_at:248:629; Interrogation_Position=402; Antisense; TCCTGCTGCTGATCACGGCATAAGG
>probe:Drosophila_2:1630907_at:4:441; Interrogation_Position=427; Antisense; GATGGGCAGAACGAAACACTCCTTT
>probe:Drosophila_2:1630907_at:458:709; Interrogation_Position=450; Antisense; TTCTAAGTTCTTTCTCTACGTGGCC
>probe:Drosophila_2:1630907_at:304:279; Interrogation_Position=465; Antisense; CTACGTGGCCATTATGCTCATTATT
>probe:Drosophila_2:1630907_at:426:19; Interrogation_Position=70; Antisense; ATATGTCTAGACACCGCCCAGAATG

Paste this into a BLAST search page for me
GTCAGCATGTGTGGCCATTTGTTTTTTTTGCTGGCCATGTCTGTACCAATATGTCGGCTGATACTTTCGTAATGGGACGAAACCCGATCACACAGTGTGTCACACAGTGTGTCCCGTTTGCAAGTGTAATACCGGTGTACGCACGAAATGGGACTATTTTCGTACTTGCTTTTTGTGGTTTATTCTTTCCATATGGTGCCGGTGCCCTATCATCTTATCTGGATATCCTGCTGCTGATCACGGCATAAGGGATGGGCAGAACGAAACACTCCTTTTTCTAAGTTCTTTCTCTACGTGGCCCTACGTGGCCATTATGCTCATTATTATATGTCTAGACACCGCCCAGAATG

Full Affymetrix probeset data:

Annotations for 1630907_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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