FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630911_s_at:

>probe:Drosophila_2:1630911_s_at:583:555; Interrogation_Position=1973; Antisense; GGACGTGCAGAAGAATCGCCCTTTG
>probe:Drosophila_2:1630911_s_at:234:719; Interrogation_Position=2002; Antisense; TTCGCTTCACCCTCAATAATCCAAA
>probe:Drosophila_2:1630911_s_at:359:111; Interrogation_Position=2027; Antisense; AGCACAGCGCTATCTAATTGGTGGA
>probe:Drosophila_2:1630911_s_at:631:421; Interrogation_Position=2090; Antisense; GAGCAAGGTTGCTGGAATCTTCAAA
>probe:Drosophila_2:1630911_s_at:484:151; Interrogation_Position=2131; Antisense; ACATACTCGATGAGGCCGTCATACT
>probe:Drosophila_2:1630911_s_at:237:371; Interrogation_Position=2168; Antisense; GAAGGTTAGCAAACGACATGTCTCG
>probe:Drosophila_2:1630911_s_at:188:243; Interrogation_Position=2196; Antisense; AATATTGCTGCCGAAATACACGAGA
>probe:Drosophila_2:1630911_s_at:364:393; Interrogation_Position=2219; Antisense; GAAAGCTATGCCATTCGTTCTCTGG
>probe:Drosophila_2:1630911_s_at:568:637; Interrogation_Position=2233; Antisense; TCGTTCTCTGGCTGAAGAATGCCGA
>probe:Drosophila_2:1630911_s_at:694:75; Interrogation_Position=2305; Antisense; AGGATAACTACGTTTCCAGTGCCGG
>probe:Drosophila_2:1630911_s_at:558:651; Interrogation_Position=2342; Antisense; TCAACGGGTCGTCCAACGCGGAATT
>probe:Drosophila_2:1630911_s_at:409:363; Interrogation_Position=2362; Antisense; GAATTCCACGCGCTGTTGCAGGCGA
>probe:Drosophila_2:1630911_s_at:638:437; Interrogation_Position=2397; Antisense; GAGGACGACGTGAACATCGACGATA
>probe:Drosophila_2:1630911_s_at:339:339; Interrogation_Position=2447; Antisense; GCTACCCTAATCCAACCAGTAATAT

Paste this into a BLAST search page for me
GGACGTGCAGAAGAATCGCCCTTTGTTCGCTTCACCCTCAATAATCCAAAAGCACAGCGCTATCTAATTGGTGGAGAGCAAGGTTGCTGGAATCTTCAAAACATACTCGATGAGGCCGTCATACTGAAGGTTAGCAAACGACATGTCTCGAATATTGCTGCCGAAATACACGAGAGAAAGCTATGCCATTCGTTCTCTGGTCGTTCTCTGGCTGAAGAATGCCGAAGGATAACTACGTTTCCAGTGCCGGTCAACGGGTCGTCCAACGCGGAATTGAATTCCACGCGCTGTTGCAGGCGAGAGGACGACGTGAACATCGACGATAGCTACCCTAATCCAACCAGTAATAT

Full Affymetrix probeset data:

Annotations for 1630911_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720