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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630927_x_at:

>probe:Drosophila_2:1630927_x_at:341:631; Interrogation_Position=3642; Antisense; TCCTGTGTATCCTCACGGAACAATT
>probe:Drosophila_2:1630927_x_at:691:263; Interrogation_Position=3670; Antisense; CAGAACCAGAGTGGGCGATCGCTTC
>probe:Drosophila_2:1630927_x_at:621:449; Interrogation_Position=3686; Antisense; GATCGCTTCTTCTTCGAAAACGGAG
>probe:Drosophila_2:1630927_x_at:705:395; Interrogation_Position=3710; Antisense; GACAAGCTCACTGGATTTACTCCTG
>probe:Drosophila_2:1630927_x_at:332:699; Interrogation_Position=3725; Antisense; TTTACTCCTGATCAACTGGAGGAGC
>probe:Drosophila_2:1630927_x_at:148:407; Interrogation_Position=3826; Antisense; GACTGTTTCCCATTCATCAACTGGA
>probe:Drosophila_2:1630927_x_at:486:485; Interrogation_Position=3868; Antisense; GTATGGCTCGTTTGCTGTGCGACAA
>probe:Drosophila_2:1630927_x_at:692:583; Interrogation_Position=3893; Antisense; TGGCAACCACATTTCATCCATGCAG
>probe:Drosophila_2:1630927_x_at:289:49; Interrogation_Position=3912; Antisense; ATGCAGCCCGAAGCTTTCCGGACTG
>probe:Drosophila_2:1630927_x_at:151:407; Interrogation_Position=3932; Antisense; GACTGTTTCCCATTCGAATCCGATT
>probe:Drosophila_2:1630927_x_at:448:297; Interrogation_Position=3946; Antisense; CGAATCCGATTATACCGTGCTCAAA
>probe:Drosophila_2:1630927_x_at:673:85; Interrogation_Position=4048; Antisense; AGTGAATCCGATTATACCGTGCTCA
>probe:Drosophila_2:1630927_x_at:662:251; Interrogation_Position=4082; Antisense; CAAGTCGACCTCACCAAATGGATTG
>probe:Drosophila_2:1630927_x_at:178:687; Interrogation_Position=4116; Antisense; TATATGCCACTGTAGATCCGTCTCA

Paste this into a BLAST search page for me
TCCTGTGTATCCTCACGGAACAATTCAGAACCAGAGTGGGCGATCGCTTCGATCGCTTCTTCTTCGAAAACGGAGGACAAGCTCACTGGATTTACTCCTGTTTACTCCTGATCAACTGGAGGAGCGACTGTTTCCCATTCATCAACTGGAGTATGGCTCGTTTGCTGTGCGACAATGGCAACCACATTTCATCCATGCAGATGCAGCCCGAAGCTTTCCGGACTGGACTGTTTCCCATTCGAATCCGATTCGAATCCGATTATACCGTGCTCAAAAGTGAATCCGATTATACCGTGCTCACAAGTCGACCTCACCAAATGGATTGTATATGCCACTGTAGATCCGTCTCA

Full Affymetrix probeset data:

Annotations for 1630927_x_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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