FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630969_s_at:

>probe:Drosophila_2:1630969_s_at:507:53; Interrogation_Position=1831; Antisense; ATGCAGGACGAGACCATCCGGGTGC
>probe:Drosophila_2:1630969_s_at:121:449; Interrogation_Position=1888; Antisense; GATGCCAATATCGTTGAGCGTCTGA
>probe:Drosophila_2:1630969_s_at:460:231; Interrogation_Position=1912; Antisense; AATGAAAGTGGTGAGCTGCGACAGC
>probe:Drosophila_2:1630969_s_at:726:335; Interrogation_Position=1926; Antisense; GCTGCGACAGCTGTTGAGACCGTAT
>probe:Drosophila_2:1630969_s_at:53:483; Interrogation_Position=1947; Antisense; GTATAAATCGATTGCCACGGCGTAT
>probe:Drosophila_2:1630969_s_at:530:5; Interrogation_Position=1957; Antisense; ATTGCCACGGCGTATACGTGCCAAA
>probe:Drosophila_2:1630969_s_at:564:669; Interrogation_Position=1971; Antisense; TACGTGCCAAACTTGCGGCGGATAT
>probe:Drosophila_2:1630969_s_at:460:569; Interrogation_Position=1987; Antisense; GGCGGATATCGCATGCTGCCGTGCC
>probe:Drosophila_2:1630969_s_at:390:329; Interrogation_Position=2014; Antisense; GCGTGCAACGGTTCCAAGAAGTCAA
>probe:Drosophila_2:1630969_s_at:528:249; Interrogation_Position=2036; Antisense; CAATGCACCGGAATCACTTTACGGC
>probe:Drosophila_2:1630969_s_at:319:275; Interrogation_Position=2052; Antisense; CTTTACGGCGGAGTTTGTGGCACTA
>probe:Drosophila_2:1630969_s_at:329:7; Interrogation_Position=2087; Antisense; ATTGCGATGAAGTCGGGCTGATTAA
>probe:Drosophila_2:1630969_s_at:617:571; Interrogation_Position=2102; Antisense; GGCTGATTAAATGCCCGAATTGCTG
>probe:Drosophila_2:1630969_s_at:712:595; Interrogation_Position=2204; Antisense; TGTGCGCAACTTTTGTAGTCGCTTA

Paste this into a BLAST search page for me
ATGCAGGACGAGACCATCCGGGTGCGATGCCAATATCGTTGAGCGTCTGAAATGAAAGTGGTGAGCTGCGACAGCGCTGCGACAGCTGTTGAGACCGTATGTATAAATCGATTGCCACGGCGTATATTGCCACGGCGTATACGTGCCAAATACGTGCCAAACTTGCGGCGGATATGGCGGATATCGCATGCTGCCGTGCCGCGTGCAACGGTTCCAAGAAGTCAACAATGCACCGGAATCACTTTACGGCCTTTACGGCGGAGTTTGTGGCACTAATTGCGATGAAGTCGGGCTGATTAAGGCTGATTAAATGCCCGAATTGCTGTGTGCGCAACTTTTGTAGTCGCTTA

Full Affymetrix probeset data:

Annotations for 1630969_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720