FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631028_s_at:

>probe:Drosophila_2:1631028_s_at:292:603; Interrogation_Position=1154; Antisense; TGTTCTTCGTGTCCGACAACGATCC
>probe:Drosophila_2:1631028_s_at:470:413; Interrogation_Position=1222; Antisense; GAGCGTGCGAACATCAAGGTTACCT
>probe:Drosophila_2:1631028_s_at:356:669; Interrogation_Position=1286; Antisense; TACGGCATCGCGAGGAGTACCTGCA
>probe:Drosophila_2:1631028_s_at:663:103; Interrogation_Position=1310; Antisense; AGACGCTGTTCCAGCATCTGGAGAC
>probe:Drosophila_2:1631028_s_at:69:103; Interrogation_Position=1331; Antisense; AGACCTGCGGTGTCTTGGAGGCCAT
>probe:Drosophila_2:1631028_s_at:450:323; Interrogation_Position=1368; Antisense; GCGCGCCAAGTTGTAGGTGTCTCTA
>probe:Drosophila_2:1631028_s_at:341:513; Interrogation_Position=1384; Antisense; GTGTCTCTAACGAGGAGCGGCTGAT
>probe:Drosophila_2:1631028_s_at:498:327; Interrogation_Position=1443; Antisense; GCGATTATGATTTTACCCTAGTTGC
>probe:Drosophila_2:1631028_s_at:267:175; Interrogation_Position=1496; Antisense; AAACCAATGTCCTCTTTGAATGATT
>probe:Drosophila_2:1631028_s_at:319:15; Interrogation_Position=1518; Antisense; ATTATGATCTGTGTGTCTCTCGCGA
>probe:Drosophila_2:1631028_s_at:357:643; Interrogation_Position=1533; Antisense; TCTCTCGCGAGGCAGAATCTTCAAA
>probe:Drosophila_2:1631028_s_at:701:363; Interrogation_Position=1547; Antisense; GAATCTTCAAAAGCCCGCACGGGAA
>probe:Drosophila_2:1631028_s_at:692:217; Interrogation_Position=1590; Antisense; AAGTCGTATTTCATCAACCGAGAGA
>probe:Drosophila_2:1631028_s_at:712:51; Interrogation_Position=1618; Antisense; ATGCACTACGCCTCTATATTGTTAC

Paste this into a BLAST search page for me
TGTTCTTCGTGTCCGACAACGATCCGAGCGTGCGAACATCAAGGTTACCTTACGGCATCGCGAGGAGTACCTGCAAGACGCTGTTCCAGCATCTGGAGACAGACCTGCGGTGTCTTGGAGGCCATGCGCGCCAAGTTGTAGGTGTCTCTAGTGTCTCTAACGAGGAGCGGCTGATGCGATTATGATTTTACCCTAGTTGCAAACCAATGTCCTCTTTGAATGATTATTATGATCTGTGTGTCTCTCGCGATCTCTCGCGAGGCAGAATCTTCAAAGAATCTTCAAAAGCCCGCACGGGAAAAGTCGTATTTCATCAACCGAGAGAATGCACTACGCCTCTATATTGTTAC

Full Affymetrix probeset data:

Annotations for 1631028_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720