FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631149_s_at:

>probe:Drosophila_2:1631149_s_at:16:319; Interrogation_Position=1020; Antisense; GCCGATGCGGCCGAAAAGTACATTG
>probe:Drosophila_2:1631149_s_at:300:171; Interrogation_Position=1074; Antisense; AAAGATGAGGTCTCTCTGTCGCTGC
>probe:Drosophila_2:1631149_s_at:85:599; Interrogation_Position=1090; Antisense; TGTCGCTGCGAAAGGCCACCGAGGA
>probe:Drosophila_2:1631149_s_at:396:109; Interrogation_Position=1120; Antisense; AGAAGGAGTTCATCGACAAGGCCAT
>probe:Drosophila_2:1631149_s_at:205:109; Interrogation_Position=1156; Antisense; AGAAGCGACGCGATTTCACCAGGAA
>probe:Drosophila_2:1631149_s_at:62:531; Interrogation_Position=1255; Antisense; GGGATTAACTCATCCACCTATATTC
>probe:Drosophila_2:1631149_s_at:345:259; Interrogation_Position=1283; Antisense; CACCCGAGTCTTTTGATCGCAGTAG
>probe:Drosophila_2:1631149_s_at:287:451; Interrogation_Position=1297; Antisense; GATCGCAGTAGACCAAGCTTAATTG
>probe:Drosophila_2:1631149_s_at:262:435; Interrogation_Position=1399; Antisense; GAGGTGGGCTCTAATTTATTTTACA
>probe:Drosophila_2:1631149_s_at:559:53; Interrogation_Position=1433; Antisense; ATGAATCCAATTGTTTCCCTCAGCA
>probe:Drosophila_2:1631149_s_at:639:631; Interrogation_Position=902; Antisense; TCCGGAGACATCTAGCCGCGAGGAA
>probe:Drosophila_2:1631149_s_at:410:437; Interrogation_Position=921; Antisense; GAGGAAATTCGCGAAGCCTTCGAGA
>probe:Drosophila_2:1631149_s_at:181:73; Interrogation_Position=952; Antisense; AGGACTTCGAGGTGGCCTACATTGA
>probe:Drosophila_2:1631149_s_at:361:391; Interrogation_Position=990; Antisense; GAAACCAAGGGCTCTGTGCGGCTGA

Paste this into a BLAST search page for me
GCCGATGCGGCCGAAAAGTACATTGAAAGATGAGGTCTCTCTGTCGCTGCTGTCGCTGCGAAAGGCCACCGAGGAAGAAGGAGTTCATCGACAAGGCCATAGAAGCGACGCGATTTCACCAGGAAGGGATTAACTCATCCACCTATATTCCACCCGAGTCTTTTGATCGCAGTAGGATCGCAGTAGACCAAGCTTAATTGGAGGTGGGCTCTAATTTATTTTACAATGAATCCAATTGTTTCCCTCAGCATCCGGAGACATCTAGCCGCGAGGAAGAGGAAATTCGCGAAGCCTTCGAGAAGGACTTCGAGGTGGCCTACATTGAGAAACCAAGGGCTCTGTGCGGCTGA

Full Affymetrix probeset data:

Annotations for 1631149_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720