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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631175_a_at:

>probe:Drosophila_2:1631175_a_at:307:215; Interrogation_Position=2425; Antisense; AAGATGATATCTACACACTGCCCGT
>probe:Drosophila_2:1631175_a_at:637:133; Interrogation_Position=2441; Antisense; ACTGCCCGTGGACAGTTGTAGGCCA
>probe:Drosophila_2:1631175_a_at:196:645; Interrogation_Position=2477; Antisense; TCTTTCGTTGCACGTGACGGAGGCA
>probe:Drosophila_2:1631175_a_at:676:287; Interrogation_Position=2494; Antisense; CGGAGGCAATGCAACCAGTTCAAAA
>probe:Drosophila_2:1631175_a_at:354:193; Interrogation_Position=2523; Antisense; AACTCCATGACCAGATCCGAGCATT
>probe:Drosophila_2:1631175_a_at:2:401; Interrogation_Position=2571; Antisense; GACAGCTCGCATCACAGTGGCCAAG
>probe:Drosophila_2:1631175_a_at:126:581; Interrogation_Position=2589; Antisense; GGCCAAGATGTATCGCCACACATGA
>probe:Drosophila_2:1631175_a_at:558:43; Interrogation_Position=2600; Antisense; ATCGCCACACATGAAGTACTCCAAG
>probe:Drosophila_2:1631175_a_at:721:89; Interrogation_Position=2614; Antisense; AGTACTCCAAGTCCGGCAATTTCGA
>probe:Drosophila_2:1631175_a_at:482:243; Interrogation_Position=2631; Antisense; AATTTCGATCAAAGTGCCAGTCCCA
>probe:Drosophila_2:1631175_a_at:212:319; Interrogation_Position=2657; Antisense; GCCGCCTTACATGCCAATTCAAGGT
>probe:Drosophila_2:1631175_a_at:517:373; Interrogation_Position=2717; Antisense; GAAGTCCAAGGATAAATGCACGCAT
>probe:Drosophila_2:1631175_a_at:265:149; Interrogation_Position=2785; Antisense; ACATAAGTTTTGTACTCTCTTGACA
>probe:Drosophila_2:1631175_a_at:167:239; Interrogation_Position=2855; Antisense; AATCTCTCTCACATTGTATCTCTAG

Paste this into a BLAST search page for me
AAGATGATATCTACACACTGCCCGTACTGCCCGTGGACAGTTGTAGGCCATCTTTCGTTGCACGTGACGGAGGCACGGAGGCAATGCAACCAGTTCAAAAAACTCCATGACCAGATCCGAGCATTGACAGCTCGCATCACAGTGGCCAAGGGCCAAGATGTATCGCCACACATGAATCGCCACACATGAAGTACTCCAAGAGTACTCCAAGTCCGGCAATTTCGAAATTTCGATCAAAGTGCCAGTCCCAGCCGCCTTACATGCCAATTCAAGGTGAAGTCCAAGGATAAATGCACGCATACATAAGTTTTGTACTCTCTTGACAAATCTCTCTCACATTGTATCTCTAG

Full Affymetrix probeset data:

Annotations for 1631175_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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