FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631217_a_at:

>probe:Drosophila_2:1631217_a_at:328:327; Interrogation_Position=383; Antisense; GCGAGGCGTTCCGTTTGTACGATAA
>probe:Drosophila_2:1631217_a_at:96:189; Interrogation_Position=479; Antisense; AACAGGAGCTGGACATTATGATCGA
>probe:Drosophila_2:1631217_a_at:263:295; Interrogation_Position=516; Antisense; CGATGGCTCCGGTACAGTGGATTTC
>probe:Drosophila_2:1631217_a_at:255:165; Interrogation_Position=572; Antisense; AAATAAACGCAATGCGTCTGCCACC
>probe:Drosophila_2:1631217_a_at:15:357; Interrogation_Position=703; Antisense; GCACACCTGTTGGACACACGTTTGT
>probe:Drosophila_2:1631217_a_at:271:157; Interrogation_Position=718; Antisense; ACACGTTTGTTTGCTCCTGTTTGCA
>probe:Drosophila_2:1631217_a_at:118:479; Interrogation_Position=736; Antisense; GTTTGCACACTTGTTTCGCTTTTTA
>probe:Drosophila_2:1631217_a_at:671:635; Interrogation_Position=751; Antisense; TCGCTTTTTATTTGCATTTTGCCCC
>probe:Drosophila_2:1631217_a_at:343:273; Interrogation_Position=765; Antisense; CATTTTGCCCCAACCATTTTACCAT
>probe:Drosophila_2:1631217_a_at:384:725; Interrogation_Position=795; Antisense; TTGTTTTTGTTTCGCGGAGCAAACA
>probe:Drosophila_2:1631217_a_at:674:419; Interrogation_Position=811; Antisense; GAGCAAACAAATCCACGTACTTCAG
>probe:Drosophila_2:1631217_a_at:189:139; Interrogation_Position=825; Antisense; ACGTACTTCAGTTTGACAATGCCAA
>probe:Drosophila_2:1631217_a_at:337:395; Interrogation_Position=839; Antisense; GACAATGCCAAACACGAGTAGAAAT
>probe:Drosophila_2:1631217_a_at:617:357; Interrogation_Position=898; Antisense; GCAACGGAATACTGTGTATGCGAAA

Paste this into a BLAST search page for me
GCGAGGCGTTCCGTTTGTACGATAAAACAGGAGCTGGACATTATGATCGACGATGGCTCCGGTACAGTGGATTTCAAATAAACGCAATGCGTCTGCCACCGCACACCTGTTGGACACACGTTTGTACACGTTTGTTTGCTCCTGTTTGCAGTTTGCACACTTGTTTCGCTTTTTATCGCTTTTTATTTGCATTTTGCCCCCATTTTGCCCCAACCATTTTACCATTTGTTTTTGTTTCGCGGAGCAAACAGAGCAAACAAATCCACGTACTTCAGACGTACTTCAGTTTGACAATGCCAAGACAATGCCAAACACGAGTAGAAATGCAACGGAATACTGTGTATGCGAAA

Full Affymetrix probeset data:

Annotations for 1631217_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720