FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631299_s_at:

>probe:Drosophila_2:1631299_s_at:596:595; Interrogation_Position=1882; Antisense; TGTGGCGATTTCAATAGCGTTCCCG
>probe:Drosophila_2:1631299_s_at:574:121; Interrogation_Position=1897; Antisense; AGCGTTCCCGAGTGTGGAATCTACA
>probe:Drosophila_2:1631299_s_at:366:607; Interrogation_Position=1925; Antisense; TGATGACGGAGCAGCTCGCCGAAAA
>probe:Drosophila_2:1631299_s_at:77:657; Interrogation_Position=1971; Antisense; TAATGCCGAGCAGGCGGTTTCGAAT
>probe:Drosophila_2:1631299_s_at:307:561; Interrogation_Position=1998; Antisense; GGAACTCGCGCAGCCTTTCAAAATG
>probe:Drosophila_2:1631299_s_at:621:527; Interrogation_Position=2073; Antisense; GGGTTGCTTGGACTATGTGTTCTAC
>probe:Drosophila_2:1631299_s_at:702:513; Interrogation_Position=2089; Antisense; GTGTTCTACCAAAACGATCGCTTCG
>probe:Drosophila_2:1631299_s_at:20:171; Interrogation_Position=2121; Antisense; AAAGGTGGTGCCACTGCCAACGGAG
>probe:Drosophila_2:1631299_s_at:34:393; Interrogation_Position=2154; Antisense; GAAAGCCAATACTGCGATACCATCG
>probe:Drosophila_2:1631299_s_at:215:455; Interrogation_Position=2169; Antisense; GATACCATCGGCTGTTTTTCCATCC
>probe:Drosophila_2:1631299_s_at:105:271; Interrogation_Position=2189; Antisense; CATCCGATCATGTTGCTCTTGTAGC
>probe:Drosophila_2:1631299_s_at:527:9; Interrogation_Position=2372; Antisense; ATTCGTTCAACAAATCCTGGCCTAT
>probe:Drosophila_2:1631299_s_at:697:303; Interrogation_Position=2387; Antisense; CCTGGCCTATTAACAAATGCTTCTT
>probe:Drosophila_2:1631299_s_at:248:233; Interrogation_Position=2402; Antisense; AATGCTTCTTCTCCTTTATAAACTG

Paste this into a BLAST search page for me
TGTGGCGATTTCAATAGCGTTCCCGAGCGTTCCCGAGTGTGGAATCTACATGATGACGGAGCAGCTCGCCGAAAATAATGCCGAGCAGGCGGTTTCGAATGGAACTCGCGCAGCCTTTCAAAATGGGGTTGCTTGGACTATGTGTTCTACGTGTTCTACCAAAACGATCGCTTCGAAAGGTGGTGCCACTGCCAACGGAGGAAAGCCAATACTGCGATACCATCGGATACCATCGGCTGTTTTTCCATCCCATCCGATCATGTTGCTCTTGTAGCATTCGTTCAACAAATCCTGGCCTATCCTGGCCTATTAACAAATGCTTCTTAATGCTTCTTCTCCTTTATAAACTG

Full Affymetrix probeset data:

Annotations for 1631299_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720