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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631316_a_at:

>probe:Drosophila_2:1631316_a_at:519:529; Interrogation_Position=2838; Antisense; GGGTAAGAGTCAGAGCAAAGCCGCT
>probe:Drosophila_2:1631316_a_at:543:421; Interrogation_Position=2850; Antisense; GAGCAAAGCCGCTTCAGTCGTACCA
>probe:Drosophila_2:1631316_a_at:302:301; Interrogation_Position=2878; Antisense; CCCACCTTTATATGCCCACATTGTG
>probe:Drosophila_2:1631316_a_at:21:303; Interrogation_Position=2893; Antisense; CCACATTGTGGAGGCGTAACATCCG
>probe:Drosophila_2:1631316_a_at:641:485; Interrogation_Position=2908; Antisense; GTAACATCCGAAGCGTTCCTTTCCA
>probe:Drosophila_2:1631316_a_at:718:721; Interrogation_Position=2928; Antisense; TTCCACACACACAATAGGCACCAAT
>probe:Drosophila_2:1631316_a_at:694:247; Interrogation_Position=2939; Antisense; CAATAGGCACCAATCGAACCATGGG
>probe:Drosophila_2:1631316_a_at:689:587; Interrogation_Position=2979; Antisense; TGGAGCAGCGGGTCAGCCACTTCGT
>probe:Drosophila_2:1631316_a_at:574:311; Interrogation_Position=2994; Antisense; GCCACTTCGTGGACTTGCCAGCAAG
>probe:Drosophila_2:1631316_a_at:7:223; Interrogation_Position=3016; Antisense; AAGGGTATACAGAGTGGTCACAGCA
>probe:Drosophila_2:1631316_a_at:618:433; Interrogation_Position=3067; Antisense; GAGTGTGCTCCTTGCAAGGCTCATG
>probe:Drosophila_2:1631316_a_at:134:227; Interrogation_Position=3082; Antisense; AAGGCTCATGTGACCGCAGATTTTC
>probe:Drosophila_2:1631316_a_at:476:91; Interrogation_Position=3099; Antisense; AGATTTTCCGGCTGGCCACGGACCA
>probe:Drosophila_2:1631316_a_at:246:275; Interrogation_Position=3117; Antisense; CGGACCAAAGCCTCTATTCAACAAG

Paste this into a BLAST search page for me
GGGTAAGAGTCAGAGCAAAGCCGCTGAGCAAAGCCGCTTCAGTCGTACCACCCACCTTTATATGCCCACATTGTGCCACATTGTGGAGGCGTAACATCCGGTAACATCCGAAGCGTTCCTTTCCATTCCACACACACAATAGGCACCAATCAATAGGCACCAATCGAACCATGGGTGGAGCAGCGGGTCAGCCACTTCGTGCCACTTCGTGGACTTGCCAGCAAGAAGGGTATACAGAGTGGTCACAGCAGAGTGTGCTCCTTGCAAGGCTCATGAAGGCTCATGTGACCGCAGATTTTCAGATTTTCCGGCTGGCCACGGACCACGGACCAAAGCCTCTATTCAACAAG

Full Affymetrix probeset data:

Annotations for 1631316_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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