FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631407_a_at:

>probe:Drosophila_2:1631407_a_at:251:111; Interrogation_Position=1731; Antisense; AGCAATCCATCAATGACCTGACCAC
>probe:Drosophila_2:1631407_a_at:67:285; Interrogation_Position=1748; Antisense; CTGACCACGCTCTGTGAAGCAACAA
>probe:Drosophila_2:1631407_a_at:220:185; Interrogation_Position=1768; Antisense; AACAAATGCCCAGGGTGCCGAGGGT
>probe:Drosophila_2:1631407_a_at:112:423; Interrogation_Position=1805; Antisense; GAGAATTCTCGAGAGGCATCCTCCT
>probe:Drosophila_2:1631407_a_at:510:3; Interrogation_Position=1875; Antisense; ATTGGATCGACGTGCCAGACGGCAT
>probe:Drosophila_2:1631407_a_at:83:459; Interrogation_Position=1919; Antisense; GATATGCTGCAACGCACGTGTTACA
>probe:Drosophila_2:1631407_a_at:627:263; Interrogation_Position=1942; Antisense; CAGCAGGCAGATTGTGTCAGCACTT
>probe:Drosophila_2:1631407_a_at:708:99; Interrogation_Position=1960; Antisense; AGCACTTAATCGGAGAGCGCTGTTA
>probe:Drosophila_2:1631407_a_at:590:517; Interrogation_Position=2013; Antisense; GTGGTTCTAAAACCCATTTCACCAT
>probe:Drosophila_2:1631407_a_at:186:243; Interrogation_Position=2070; Antisense; AATAGTCCTTTATCATCCATTGTCT
>probe:Drosophila_2:1631407_a_at:355:599; Interrogation_Position=2128; Antisense; TGTACCCCACTTAATTGTTTTCTCT
>probe:Drosophila_2:1631407_a_at:136:249; Interrogation_Position=2140; Antisense; AATTGTTTTCTCTACGCTCTTGGCA
>probe:Drosophila_2:1631407_a_at:297:135; Interrogation_Position=2153; Antisense; ACGCTCTTGGCACTGTTACTGTAAT
>probe:Drosophila_2:1631407_a_at:534:27; Interrogation_Position=2182; Antisense; ATACCCGTTAAAAATGCCTCTCAAT

Paste this into a BLAST search page for me
AGCAATCCATCAATGACCTGACCACCTGACCACGCTCTGTGAAGCAACAAAACAAATGCCCAGGGTGCCGAGGGTGAGAATTCTCGAGAGGCATCCTCCTATTGGATCGACGTGCCAGACGGCATGATATGCTGCAACGCACGTGTTACACAGCAGGCAGATTGTGTCAGCACTTAGCACTTAATCGGAGAGCGCTGTTAGTGGTTCTAAAACCCATTTCACCATAATAGTCCTTTATCATCCATTGTCTTGTACCCCACTTAATTGTTTTCTCTAATTGTTTTCTCTACGCTCTTGGCAACGCTCTTGGCACTGTTACTGTAATATACCCGTTAAAAATGCCTCTCAAT

Full Affymetrix probeset data:

Annotations for 1631407_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720