FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631526_s_at:

>probe:Drosophila_2:1631526_s_at:64:677; Interrogation_Position=3061; Antisense; TATGTACTACCCGATTCGGACCCGG
>probe:Drosophila_2:1631526_s_at:410:447; Interrogation_Position=3085; Antisense; GATGCCGGGCAATTCACCACACTAA
>probe:Drosophila_2:1631526_s_at:688:51; Interrogation_Position=3128; Antisense; ATGCTGATCGGATCGAGTTCCTCAC
>probe:Drosophila_2:1631526_s_at:68:77; Interrogation_Position=3164; Antisense; AGGAGCTAAAGCAGGCGCTCATCTC
>probe:Drosophila_2:1631526_s_at:689:111; Interrogation_Position=3197; Antisense; AGCAAGCCAGCAAGGTGATCGACAA
>probe:Drosophila_2:1631526_s_at:594:397; Interrogation_Position=3217; Antisense; GACAAGCTGCTGATTGTGATCTCCA
>probe:Drosophila_2:1631526_s_at:15:709; Interrogation_Position=3280; Antisense; TTACTGCACCCCATTCGGAATATTT
>probe:Drosophila_2:1631526_s_at:245:33; Interrogation_Position=3309; Antisense; ATCACAGTTTGACCTTTTTTAGACG
>probe:Drosophila_2:1631526_s_at:266:513; Interrogation_Position=3344; Antisense; GTGTAGGCCCCAAAGAATCCAGAAC
>probe:Drosophila_2:1631526_s_at:413:15; Interrogation_Position=3409; Antisense; ATTTTGATATCGATGCGCCAGGCGC
>probe:Drosophila_2:1631526_s_at:152:269; Interrogation_Position=3427; Antisense; CAGGCGCAATATGCATACGCTATAT
>probe:Drosophila_2:1631526_s_at:115:269; Interrogation_Position=3532; Antisense; CAGGATTGATTTGTGGCTGGTTCCA
>probe:Drosophila_2:1631526_s_at:174:721; Interrogation_Position=3552; Antisense; TTCCAGGCTGTGTCTTTGTTGTTTT
>probe:Drosophila_2:1631526_s_at:385:467; Interrogation_Position=3569; Antisense; GTTGTTTTGGCGTTGTCGTCAGAGA

Paste this into a BLAST search page for me
TATGTACTACCCGATTCGGACCCGGGATGCCGGGCAATTCACCACACTAAATGCTGATCGGATCGAGTTCCTCACAGGAGCTAAAGCAGGCGCTCATCTCAGCAAGCCAGCAAGGTGATCGACAAGACAAGCTGCTGATTGTGATCTCCATTACTGCACCCCATTCGGAATATTTATCACAGTTTGACCTTTTTTAGACGGTGTAGGCCCCAAAGAATCCAGAACATTTTGATATCGATGCGCCAGGCGCCAGGCGCAATATGCATACGCTATATCAGGATTGATTTGTGGCTGGTTCCATTCCAGGCTGTGTCTTTGTTGTTTTGTTGTTTTGGCGTTGTCGTCAGAGA

Full Affymetrix probeset data:

Annotations for 1631526_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720