FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631542_a_at:

>probe:Drosophila_2:1631542_a_at:398:101; Interrogation_Position=4301; Antisense; AGACGTAGAAGCGATCTGCGATCTG
>probe:Drosophila_2:1631542_a_at:646:475; Interrogation_Position=4338; Antisense; GTTATCCTAGGTACGCATTCTTTGA
>probe:Drosophila_2:1631542_a_at:380:343; Interrogation_Position=4363; Antisense; GCATTGTGAATTTGTTTCGGCCTTA
>probe:Drosophila_2:1631542_a_at:183:639; Interrogation_Position=4379; Antisense; TCGGCCTTAGTTGCATTTGTATCTG
>probe:Drosophila_2:1631542_a_at:444:481; Interrogation_Position=4397; Antisense; GTATCTGCAGATTAAGTTACCCTTA
>probe:Drosophila_2:1631542_a_at:146:657; Interrogation_Position=4420; Antisense; TAAGTTTGAGTTGTACCAGTACCAG
>probe:Drosophila_2:1631542_a_at:196:261; Interrogation_Position=4436; Antisense; CAGTACCAGTATGTTTAGTTGCCCT
>probe:Drosophila_2:1631542_a_at:457:677; Interrogation_Position=4451; Antisense; TAGTTGCCCTGCCTTATTTGAGAGC
>probe:Drosophila_2:1631542_a_at:279:675; Interrogation_Position=4488; Antisense; TAGCACATATCCCTTTCGATCCAAG
>probe:Drosophila_2:1631542_a_at:264:151; Interrogation_Position=4541; Antisense; ACATACCATTCGTTGCTTTCGAAGT
>probe:Drosophila_2:1631542_a_at:590:673; Interrogation_Position=4595; Antisense; TAGCCACCAATCAGCTTCGATGCGA
>probe:Drosophila_2:1631542_a_at:185:465; Interrogation_Position=4618; Antisense; GATTGGAACCTTTCGTTGCTAACTC
>probe:Drosophila_2:1631542_a_at:220:661; Interrogation_Position=4637; Antisense; TAACTCCACTTTTAGCGTTTCGATA
>probe:Drosophila_2:1631542_a_at:391:307; Interrogation_Position=4713; Antisense; CCATTAGTTTCGTAAGCCTTCGCAT

Paste this into a BLAST search page for me
AGACGTAGAAGCGATCTGCGATCTGGTTATCCTAGGTACGCATTCTTTGAGCATTGTGAATTTGTTTCGGCCTTATCGGCCTTAGTTGCATTTGTATCTGGTATCTGCAGATTAAGTTACCCTTATAAGTTTGAGTTGTACCAGTACCAGCAGTACCAGTATGTTTAGTTGCCCTTAGTTGCCCTGCCTTATTTGAGAGCTAGCACATATCCCTTTCGATCCAAGACATACCATTCGTTGCTTTCGAAGTTAGCCACCAATCAGCTTCGATGCGAGATTGGAACCTTTCGTTGCTAACTCTAACTCCACTTTTAGCGTTTCGATACCATTAGTTTCGTAAGCCTTCGCAT

Full Affymetrix probeset data:

Annotations for 1631542_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720