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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631579_a_at:

>probe:Drosophila_2:1631579_a_at:443:581; Interrogation_Position=10032; Antisense; TGGCTTGCCTATGACCCCAGAGGAA
>probe:Drosophila_2:1631579_a_at:75:565; Interrogation_Position=10053; Antisense; GGAATTCGAGGCTGTCCTTACCGAG
>probe:Drosophila_2:1631579_a_at:181:301; Interrogation_Position=10104; Antisense; CGCCATAGCTCATGTGCGACAGTAT
>probe:Drosophila_2:1631579_a_at:472:407; Interrogation_Position=10130; Antisense; GACGGATTTCAACTCTCAACGCTAG
>probe:Drosophila_2:1631579_a_at:295:545; Interrogation_Position=10260; Antisense; GGATCGCACAGAAGCCTTTATAGTA
>probe:Drosophila_2:1631579_a_at:702:23; Interrogation_Position=10279; Antisense; ATAGTATCCAAATCCGACTCGGAGG
>probe:Drosophila_2:1631579_a_at:418:549; Interrogation_Position=10299; Antisense; GGAGGTGTTCGAGATCTATGCCATT
>probe:Drosophila_2:1631579_a_at:219:427; Interrogation_Position=10309; Antisense; GAGATCTATGCCATTCTGTCGGAAA
>probe:Drosophila_2:1631579_a_at:96:275; Interrogation_Position=10335; Antisense; CTTGTATCAAGTATCCAGCGCTCTG
>probe:Drosophila_2:1631579_a_at:231:263; Interrogation_Position=10350; Antisense; CAGCGCTCTGACTAACATGGAGATC
>probe:Drosophila_2:1631579_a_at:352:55; Interrogation_Position=10378; Antisense; ATGAAGAGCTACTCGGCAGGCAGCG
>probe:Drosophila_2:1631579_a_at:173:327; Interrogation_Position=10470; Antisense; GCTAATCGCAGAAGTAGGCTCCCTT
>probe:Drosophila_2:1631579_a_at:317:485; Interrogation_Position=10483; Antisense; GTAGGCTCCCTTTTATATGTAATCT
>probe:Drosophila_2:1631579_a_at:230:399; Interrogation_Position=10531; Antisense; GACACTGCGGTGTACGTAAGCGATC

Paste this into a BLAST search page for me
TGGCTTGCCTATGACCCCAGAGGAAGGAATTCGAGGCTGTCCTTACCGAGCGCCATAGCTCATGTGCGACAGTATGACGGATTTCAACTCTCAACGCTAGGGATCGCACAGAAGCCTTTATAGTAATAGTATCCAAATCCGACTCGGAGGGGAGGTGTTCGAGATCTATGCCATTGAGATCTATGCCATTCTGTCGGAAACTTGTATCAAGTATCCAGCGCTCTGCAGCGCTCTGACTAACATGGAGATCATGAAGAGCTACTCGGCAGGCAGCGGCTAATCGCAGAAGTAGGCTCCCTTGTAGGCTCCCTTTTATATGTAATCTGACACTGCGGTGTACGTAAGCGATC

Full Affymetrix probeset data:

Annotations for 1631579_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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