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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631585_a_at:

>probe:Drosophila_2:1631585_a_at:250:305; Interrogation_Position=1021; Antisense; CCGGACGAGGATGAAGCACTGCTTA
>probe:Drosophila_2:1631585_a_at:141:143; Interrogation_Position=1038; Antisense; ACTGCTTAACACCTTCAACACGGAG
>probe:Drosophila_2:1631585_a_at:106:465; Interrogation_Position=1077; Antisense; GTTGGCGTGGCACAGAAACGTCTAC
>probe:Drosophila_2:1631585_a_at:386:495; Interrogation_Position=1123; Antisense; GTCACGACCACTGGCGATTTCAAGA
>probe:Drosophila_2:1631585_a_at:160:125; Interrogation_Position=1224; Antisense; AGCCGCAAACTTCAACCTGATAAAT
>probe:Drosophila_2:1631585_a_at:684:75; Interrogation_Position=1269; Antisense; AGGAGTCTTTCTGTTGGCGGGCACC
>probe:Drosophila_2:1631585_a_at:346:567; Interrogation_Position=1288; Antisense; GGCACCAACTTCAACAAGGGCGAGA
>probe:Drosophila_2:1631585_a_at:619:221; Interrogation_Position=1303; Antisense; AAGGGCGAGATCCTGCGCTCCGTTA
>probe:Drosophila_2:1631585_a_at:77:337; Interrogation_Position=1319; Antisense; GCTCCGTTAGCGTTACCTCGAAGAA
>probe:Drosophila_2:1631585_a_at:166:637; Interrogation_Position=1336; Antisense; TCGAAGAACAGCCTCCAGCCATTGG
>probe:Drosophila_2:1631585_a_at:43:659; Interrogation_Position=1365; Antisense; TTTCCAGGGAAACAAGCAGATCGTC
>probe:Drosophila_2:1631585_a_at:474:551; Interrogation_Position=1435; Antisense; GGAGAATCCGGCATTGTTACGGTTT
>probe:Drosophila_2:1631585_a_at:652:645; Interrogation_Position=1452; Antisense; TACGGTTTGGGCACAGGACGCAAGT
>probe:Drosophila_2:1631585_a_at:551:395; Interrogation_Position=1521; Antisense; GAAATCACGCAAGCAAGCGCCATAT

Paste this into a BLAST search page for me
CCGGACGAGGATGAAGCACTGCTTAACTGCTTAACACCTTCAACACGGAGGTTGGCGTGGCACAGAAACGTCTACGTCACGACCACTGGCGATTTCAAGAAGCCGCAAACTTCAACCTGATAAATAGGAGTCTTTCTGTTGGCGGGCACCGGCACCAACTTCAACAAGGGCGAGAAAGGGCGAGATCCTGCGCTCCGTTAGCTCCGTTAGCGTTACCTCGAAGAATCGAAGAACAGCCTCCAGCCATTGGTTTCCAGGGAAACAAGCAGATCGTCGGAGAATCCGGCATTGTTACGGTTTTACGGTTTGGGCACAGGACGCAAGTGAAATCACGCAAGCAAGCGCCATAT

Full Affymetrix probeset data:

Annotations for 1631585_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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