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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631619_a_at:

>probe:Drosophila_2:1631619_a_at:99:325; Interrogation_Position=2780; Antisense; GCGCTATCCCAAAACCTACTATAAT
>probe:Drosophila_2:1631619_a_at:225:365; Interrogation_Position=2828; Antisense; GAATCCCAAAGTAGCTTCTAGTGGA
>probe:Drosophila_2:1631619_a_at:427:481; Interrogation_Position=2891; Antisense; GTTTGTGAGGATATGTGTCGCCTTA
>probe:Drosophila_2:1631619_a_at:125:495; Interrogation_Position=2932; Antisense; GTCAGACTACGAAGTATACGCCCAA
>probe:Drosophila_2:1631619_a_at:135:687; Interrogation_Position=2946; Antisense; TATACGCCCAATTGATACACATGCA
>probe:Drosophila_2:1631619_a_at:701:455; Interrogation_Position=2959; Antisense; GATACACATGCACAACTGGACAGTT
>probe:Drosophila_2:1631619_a_at:255:657; Interrogation_Position=2986; Antisense; TAAATGACCGTCTGTTCCCTTTAAT
>probe:Drosophila_2:1631619_a_at:599:205; Interrogation_Position=3014; Antisense; AAGCTCTTACTTGTTTTTTGAATCA
>probe:Drosophila_2:1631619_a_at:262:491; Interrogation_Position=3092; Antisense; GTAATTTATTACCACCCCAGATCAA
>probe:Drosophila_2:1631619_a_at:126:15; Interrogation_Position=3099; Antisense; ATTACCACCCCAGATCAAAAGCGAT
>probe:Drosophila_2:1631619_a_at:127:165; Interrogation_Position=3116; Antisense; AAAGCGATCCATGCCTTAGGGACGT
>probe:Drosophila_2:1631619_a_at:669:527; Interrogation_Position=3161; Antisense; GGGACTTTCATTTGTTAAACTGTAT
>probe:Drosophila_2:1631619_a_at:602:477; Interrogation_Position=3238; Antisense; GTTTATGACGCTTTATATCATGCCA
>probe:Drosophila_2:1631619_a_at:364:643; Interrogation_Position=3284; Antisense; TCTACTGTTTTCTTATATACCCAAG

Paste this into a BLAST search page for me
GCGCTATCCCAAAACCTACTATAATGAATCCCAAAGTAGCTTCTAGTGGAGTTTGTGAGGATATGTGTCGCCTTAGTCAGACTACGAAGTATACGCCCAATATACGCCCAATTGATACACATGCAGATACACATGCACAACTGGACAGTTTAAATGACCGTCTGTTCCCTTTAATAAGCTCTTACTTGTTTTTTGAATCAGTAATTTATTACCACCCCAGATCAAATTACCACCCCAGATCAAAAGCGATAAAGCGATCCATGCCTTAGGGACGTGGGACTTTCATTTGTTAAACTGTATGTTTATGACGCTTTATATCATGCCATCTACTGTTTTCTTATATACCCAAG

Full Affymetrix probeset data:

Annotations for 1631619_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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