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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631632_s_at:

>probe:Drosophila_2:1631632_s_at:57:485; Interrogation_Position=3453; Antisense; GTATCGCGGCGTTTGGAGCTCGCAA
>probe:Drosophila_2:1631632_s_at:634:277; Interrogation_Position=3471; Antisense; CTCGCAAGAAGCTGCTGACGGCCAT
>probe:Drosophila_2:1631632_s_at:120:199; Interrogation_Position=3512; Antisense; AACGAGGCGGCCTGCAGCACAATGC
>probe:Drosophila_2:1631632_s_at:101:203; Interrogation_Position=3617; Antisense; AACCAGTGGTGATCCGCTCCTGTCG
>probe:Drosophila_2:1631632_s_at:638:411; Interrogation_Position=3645; Antisense; GACCCCATTGCCTCGAATTCTTTTT
>probe:Drosophila_2:1631632_s_at:353:619; Interrogation_Position=3683; Antisense; TGCATGCCCATTTATTTGGTAGTCG
>probe:Drosophila_2:1631632_s_at:215:183; Interrogation_Position=3758; Antisense; AAAATGGCAACTCCCTGGGCGAATA
>probe:Drosophila_2:1631632_s_at:377:595; Interrogation_Position=3773; Antisense; TGGGCGAATAGCTTTCCCGCACAAC
>probe:Drosophila_2:1631632_s_at:266:187; Interrogation_Position=3795; Antisense; AACACAGCCTTGACCTTGACTTATA
>probe:Drosophila_2:1631632_s_at:101:413; Interrogation_Position=3806; Antisense; GACCTTGACTTATACTCGCATTTGT
>probe:Drosophila_2:1631632_s_at:45:219; Interrogation_Position=3842; Antisense; AAGTAGCATAGCTGCGCTCGGGAAA
>probe:Drosophila_2:1631632_s_at:609:393; Interrogation_Position=3863; Antisense; GAAAGTGCACAGTTTTCCCAGTGTG
>probe:Drosophila_2:1631632_s_at:409:633; Interrogation_Position=3878; Antisense; TCCCAGTGTGCCAATAGGTCGTAGT
>probe:Drosophila_2:1631632_s_at:127:499; Interrogation_Position=3895; Antisense; GTCGTAGTTGCCTTTATTTTAAGCG

Paste this into a BLAST search page for me
GTATCGCGGCGTTTGGAGCTCGCAACTCGCAAGAAGCTGCTGACGGCCATAACGAGGCGGCCTGCAGCACAATGCAACCAGTGGTGATCCGCTCCTGTCGGACCCCATTGCCTCGAATTCTTTTTTGCATGCCCATTTATTTGGTAGTCGAAAATGGCAACTCCCTGGGCGAATATGGGCGAATAGCTTTCCCGCACAACAACACAGCCTTGACCTTGACTTATAGACCTTGACTTATACTCGCATTTGTAAGTAGCATAGCTGCGCTCGGGAAAGAAAGTGCACAGTTTTCCCAGTGTGTCCCAGTGTGCCAATAGGTCGTAGTGTCGTAGTTGCCTTTATTTTAAGCG

Full Affymetrix probeset data:

Annotations for 1631632_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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