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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631697_at:

>probe:Drosophila_2:1631697_at:519:579; Interrogation_Position=181; Antisense; GGCCATCGAGGATCACCTGACTCAA
>probe:Drosophila_2:1631697_at:11:79; Interrogation_Position=189; Antisense; AGGATCACCTGACTCAAGCTGCCAT
>probe:Drosophila_2:1631697_at:571:11; Interrogation_Position=227; Antisense; ATTCTGCCCGCCTAAAGATGTGTGC
>probe:Drosophila_2:1631697_at:467:99; Interrogation_Position=242; Antisense; AGATGTGTGCATACCGCGGAGAAGT
>probe:Drosophila_2:1631697_at:170:373; Interrogation_Position=262; Antisense; GAAGTCATCCGATCAAATTTGTTTT
>probe:Drosophila_2:1631697_at:373:509; Interrogation_Position=307; Antisense; GTGAATTTTTTACTTTCTGCAAACA
>probe:Drosophila_2:1631697_at:105:471; Interrogation_Position=396; Antisense; GTTCCCATCGCTTATCAGCGGTTTT
>probe:Drosophila_2:1631697_at:562:539; Interrogation_Position=415; Antisense; GGTTTTTGTACCGAATCTGCTGAGC
>probe:Drosophila_2:1631697_at:1:305; Interrogation_Position=425; Antisense; CCGAATCTGCTGAGCTCTAGAGCTG
>probe:Drosophila_2:1631697_at:2:655; Interrogation_Position=520; Antisense; TAATTCGCGACTCATATGAATCACA
>probe:Drosophila_2:1631697_at:139:203; Interrogation_Position=545; Antisense; AACCTGTTCTATAGCACGTTCTTCT
>probe:Drosophila_2:1631697_at:313:355; Interrogation_Position=558; Antisense; GCACGTTCTTCTTAAATTCTAGCGA
>probe:Drosophila_2:1631697_at:204:659; Interrogation_Position=585; Antisense; TAACCAGATGGCTGCAAATCATAAT
>probe:Drosophila_2:1631697_at:2:271; Interrogation_Position=604; Antisense; CATAATGAATGGGTTTGTCCCCTAA

Paste this into a BLAST search page for me
GGCCATCGAGGATCACCTGACTCAAAGGATCACCTGACTCAAGCTGCCATATTCTGCCCGCCTAAAGATGTGTGCAGATGTGTGCATACCGCGGAGAAGTGAAGTCATCCGATCAAATTTGTTTTGTGAATTTTTTACTTTCTGCAAACAGTTCCCATCGCTTATCAGCGGTTTTGGTTTTTGTACCGAATCTGCTGAGCCCGAATCTGCTGAGCTCTAGAGCTGTAATTCGCGACTCATATGAATCACAAACCTGTTCTATAGCACGTTCTTCTGCACGTTCTTCTTAAATTCTAGCGATAACCAGATGGCTGCAAATCATAATCATAATGAATGGGTTTGTCCCCTAA

Full Affymetrix probeset data:

Annotations for 1631697_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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