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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631698_s_at:

>probe:Drosophila_2:1631698_s_at:145:483; Interrogation_Position=4249; Antisense; GTATTTGTCATCTCTACCGGTTAAC
>probe:Drosophila_2:1631698_s_at:657:241; Interrogation_Position=4365; Antisense; AATAGTGATGTTCTCTTTTGCCGAC
>probe:Drosophila_2:1631698_s_at:77:401; Interrogation_Position=4387; Antisense; GACAGGCCCCATATGCATATAGTTA
>probe:Drosophila_2:1631698_s_at:264:145; Interrogation_Position=4470; Antisense; ACTGCTCACCGAATCCATATGTATT
>probe:Drosophila_2:1631698_s_at:473:481; Interrogation_Position=4490; Antisense; GTATTTCATTGCATTGCGTTGCCTT
>probe:Drosophila_2:1631698_s_at:505:627; Interrogation_Position=4509; Antisense; TGCCTTCTTGTTTGTGTTTTTCTGT
>probe:Drosophila_2:1631698_s_at:474:285; Interrogation_Position=4530; Antisense; CTGTTCGACGTTACCATCACTATAA
>probe:Drosophila_2:1631698_s_at:42:245; Interrogation_Position=4553; Antisense; AATTTCTTTTTATGTCTCTGCGTAT
>probe:Drosophila_2:1631698_s_at:600:533; Interrogation_Position=4593; Antisense; GGTGATCACACTGCATATTCCTTAC
>probe:Drosophila_2:1631698_s_at:662:19; Interrogation_Position=4607; Antisense; ATATTCCTTACACCTGAGTCCAGAA
>probe:Drosophila_2:1631698_s_at:69:387; Interrogation_Position=4629; Antisense; GAACAAGACTTTCTTCCAGCGTCAG
>probe:Drosophila_2:1631698_s_at:90:243; Interrogation_Position=4671; Antisense; AATATACCTCAATCGGCTGTCCATA
>probe:Drosophila_2:1631698_s_at:322:597; Interrogation_Position=4688; Antisense; TGTCCATAACTAGCTTTTCCAACGC
>probe:Drosophila_2:1631698_s_at:233:317; Interrogation_Position=4713; Antisense; GCCGACCTCAAATCTTTCACAAAAA

Paste this into a BLAST search page for me
GTATTTGTCATCTCTACCGGTTAACAATAGTGATGTTCTCTTTTGCCGACGACAGGCCCCATATGCATATAGTTAACTGCTCACCGAATCCATATGTATTGTATTTCATTGCATTGCGTTGCCTTTGCCTTCTTGTTTGTGTTTTTCTGTCTGTTCGACGTTACCATCACTATAAAATTTCTTTTTATGTCTCTGCGTATGGTGATCACACTGCATATTCCTTACATATTCCTTACACCTGAGTCCAGAAGAACAAGACTTTCTTCCAGCGTCAGAATATACCTCAATCGGCTGTCCATATGTCCATAACTAGCTTTTCCAACGCGCCGACCTCAAATCTTTCACAAAAA

Full Affymetrix probeset data:

Annotations for 1631698_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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