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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631746_a_at:

>probe:Drosophila_2:1631746_a_at:114:721; Interrogation_Position=2428; Antisense; TTGTTCCAACTCTTTGTGGCCGAAA
>probe:Drosophila_2:1631746_a_at:563:91; Interrogation_Position=2510; Antisense; AGTATCTGTTCGACTTCCTGGCACA
>probe:Drosophila_2:1631746_a_at:642:355; Interrogation_Position=2530; Antisense; GCACAGGCCTCCAGTGATGAGAGCA
>probe:Drosophila_2:1631746_a_at:206:57; Interrogation_Position=2546; Antisense; ATGAGAGCATCGTTCGCTCCCAGGA
>probe:Drosophila_2:1631746_a_at:452:73; Interrogation_Position=2567; Antisense; AGGACTATTTCACCTGTGTGCAGTA
>probe:Drosophila_2:1631746_a_at:211:287; Interrogation_Position=2580; Antisense; CTGTGTGCAGTACATAGCCGCCAAT
>probe:Drosophila_2:1631746_a_at:14:23; Interrogation_Position=2593; Antisense; ATAGCCGCCAATCCTGTGGGTGAAC
>probe:Drosophila_2:1631746_a_at:101:609; Interrogation_Position=2613; Antisense; TGAACCGGTGGTCTGGGAATTCTAC
>probe:Drosophila_2:1631746_a_at:345:475; Interrogation_Position=2666; Antisense; GTTTTGGCCTGAACAACCGCAACTT
>probe:Drosophila_2:1631746_a_at:153:131; Interrogation_Position=2681; Antisense; ACCGCAACTTTGGACGACTTATCGC
>probe:Drosophila_2:1631746_a_at:147:401; Interrogation_Position=2696; Antisense; GACTTATCGCCCAGATTACGGCCAA
>probe:Drosophila_2:1631746_a_at:401:587; Interrogation_Position=2741; Antisense; TGGAGGAGGTTCAGCACTTCTTCTC
>probe:Drosophila_2:1631746_a_at:371:417; Interrogation_Position=2783; Antisense; GAGCTGGAGCTAACTCCCGGTTGGA
>probe:Drosophila_2:1631746_a_at:2:379; Interrogation_Position=2854; Antisense; GAAGCTGACATCACCGACTGGCTAA

Paste this into a BLAST search page for me
TTGTTCCAACTCTTTGTGGCCGAAAAGTATCTGTTCGACTTCCTGGCACAGCACAGGCCTCCAGTGATGAGAGCAATGAGAGCATCGTTCGCTCCCAGGAAGGACTATTTCACCTGTGTGCAGTACTGTGTGCAGTACATAGCCGCCAATATAGCCGCCAATCCTGTGGGTGAACTGAACCGGTGGTCTGGGAATTCTACGTTTTGGCCTGAACAACCGCAACTTACCGCAACTTTGGACGACTTATCGCGACTTATCGCCCAGATTACGGCCAATGGAGGAGGTTCAGCACTTCTTCTCGAGCTGGAGCTAACTCCCGGTTGGAGAAGCTGACATCACCGACTGGCTAA

Full Affymetrix probeset data:

Annotations for 1631746_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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