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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631777_a_at:

>probe:Drosophila_2:1631777_a_at:250:391; Interrogation_Position=3119; Antisense; GAAACGCGCAGCAACCAAATACTGT
>probe:Drosophila_2:1631777_a_at:313:669; Interrogation_Position=3138; Antisense; TACTGTGATACGCATGTTCATGTCT
>probe:Drosophila_2:1631777_a_at:216:191; Interrogation_Position=3195; Antisense; AACTAGGTTTCCAACTTTGCTGTCT
>probe:Drosophila_2:1631777_a_at:616:633; Interrogation_Position=3222; Antisense; TCCCGATGCCGAAACAAGTGTACTT
>probe:Drosophila_2:1631777_a_at:136:135; Interrogation_Position=3265; Antisense; ACGCAATTGCAATCGTAGCCGTAAT
>probe:Drosophila_2:1631777_a_at:266:315; Interrogation_Position=3290; Antisense; GCCTAATTGTATTCAGTGTGCCATT
>probe:Drosophila_2:1631777_a_at:328:505; Interrogation_Position=3307; Antisense; GTGCCATTAGCTTTAGGGACTTAAC
>probe:Drosophila_2:1631777_a_at:164:213; Interrogation_Position=3364; Antisense; AAGAGTCCTTTTCCAGCAACGAACT
>probe:Drosophila_2:1631777_a_at:329:139; Interrogation_Position=3400; Antisense; ACTGAGGGTTTTCCTTCAACTTCTG
>probe:Drosophila_2:1631777_a_at:202:653; Interrogation_Position=3415; Antisense; TCAACTTCTGCTGATTTTCGCACAG
>probe:Drosophila_2:1631777_a_at:66:503; Interrogation_Position=3445; Antisense; GTCCTACTTCTAAATGTCCAACTAA
>probe:Drosophila_2:1631777_a_at:142:203; Interrogation_Position=3488; Antisense; AACCTTTATACAATTGCGGGCTAAT
>probe:Drosophila_2:1631777_a_at:334:241; Interrogation_Position=3510; Antisense; AATACGAATCGTATGGAGCCCGCGA
>probe:Drosophila_2:1631777_a_at:569:553; Interrogation_Position=3524; Antisense; GGAGCCCGCGACTAACAGTATATGT

Paste this into a BLAST search page for me
GAAACGCGCAGCAACCAAATACTGTTACTGTGATACGCATGTTCATGTCTAACTAGGTTTCCAACTTTGCTGTCTTCCCGATGCCGAAACAAGTGTACTTACGCAATTGCAATCGTAGCCGTAATGCCTAATTGTATTCAGTGTGCCATTGTGCCATTAGCTTTAGGGACTTAACAAGAGTCCTTTTCCAGCAACGAACTACTGAGGGTTTTCCTTCAACTTCTGTCAACTTCTGCTGATTTTCGCACAGGTCCTACTTCTAAATGTCCAACTAAAACCTTTATACAATTGCGGGCTAATAATACGAATCGTATGGAGCCCGCGAGGAGCCCGCGACTAACAGTATATGT

Full Affymetrix probeset data:

Annotations for 1631777_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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