FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631779_s_at:

>probe:Drosophila_2:1631779_s_at:288:193; Interrogation_Position=3812; Antisense; AACTAAGCCGGTGAGCCTGCAGGTC
>probe:Drosophila_2:1631779_s_at:35:125; Interrogation_Position=3825; Antisense; AGCCTGCAGGTCAAACTCAAGCCCA
>probe:Drosophila_2:1631779_s_at:431:277; Interrogation_Position=3905; Antisense; CGTGAAAACCAACGGCGGACGCAGT
>probe:Drosophila_2:1631779_s_at:177:321; Interrogation_Position=3950; Antisense; GCGCTCCCAACTGTTGGACGCGATA
>probe:Drosophila_2:1631779_s_at:20:467; Interrogation_Position=3962; Antisense; GTTGGACGCGATACGGAACTTCAAA
>probe:Drosophila_2:1631779_s_at:192:709; Interrogation_Position=3981; Antisense; TTCAAACGCGAGGACCTCAACCGAT
>probe:Drosophila_2:1631779_s_at:189:343; Interrogation_Position=3993; Antisense; GACCTCAACCGATCCTAAGTTTTTG
>probe:Drosophila_2:1631779_s_at:276:613; Interrogation_Position=4022; Antisense; TGAACTGAGGAGAGTCGGGCAAAAA
>probe:Drosophila_2:1631779_s_at:24:359; Interrogation_Position=4040; Antisense; GCAAAAATTATTGAAGCAGCGCACA
>probe:Drosophila_2:1631779_s_at:413:113; Interrogation_Position=4054; Antisense; AGCAGCGCACAAGTTATATATTTTT
>probe:Drosophila_2:1631779_s_at:353:187; Interrogation_Position=4145; Antisense; AACTTATTTTCACCTCATCCCCGTG
>probe:Drosophila_2:1631779_s_at:105:647; Interrogation_Position=4159; Antisense; TCATCCCCGTGCTTTTAAAGTGCCC
>probe:Drosophila_2:1631779_s_at:291:91; Interrogation_Position=4245; Antisense; AGTTTGTTTTAGTCATTAGGTCACA
>probe:Drosophila_2:1631779_s_at:132:319; Interrogation_Position=4358; Antisense; GCCGATATAATATTTCTTACGTCAT

Paste this into a BLAST search page for me
AACTAAGCCGGTGAGCCTGCAGGTCAGCCTGCAGGTCAAACTCAAGCCCACGTGAAAACCAACGGCGGACGCAGTGCGCTCCCAACTGTTGGACGCGATAGTTGGACGCGATACGGAACTTCAAATTCAAACGCGAGGACCTCAACCGATGACCTCAACCGATCCTAAGTTTTTGTGAACTGAGGAGAGTCGGGCAAAAAGCAAAAATTATTGAAGCAGCGCACAAGCAGCGCACAAGTTATATATTTTTAACTTATTTTCACCTCATCCCCGTGTCATCCCCGTGCTTTTAAAGTGCCCAGTTTGTTTTAGTCATTAGGTCACAGCCGATATAATATTTCTTACGTCAT

Full Affymetrix probeset data:

Annotations for 1631779_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720