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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631794_at:

>probe:Drosophila_2:1631794_at:551:191; Interrogation_Position=1748; Antisense; AACTTTCCATCGCAGAGGTGACTCA
>probe:Drosophila_2:1631794_at:121:87; Interrogation_Position=1817; Antisense; AGTGCCTTCTCAGCTACGAGGTGTG
>probe:Drosophila_2:1631794_at:229:381; Interrogation_Position=1849; Antisense; GAACGCGATAATCTGGGTCGCTCCG
>probe:Drosophila_2:1631794_at:316:589; Interrogation_Position=1879; Antisense; TGGATGCTCATCTCACAGGGCTGGC
>probe:Drosophila_2:1631794_at:117:643; Interrogation_Position=1905; Antisense; TCTGCCATATCCGTCGTTTCAGTAT
>probe:Drosophila_2:1631794_at:121:683; Interrogation_Position=1927; Antisense; TATGCGCCCGGCGATAAGGGATCCG
>probe:Drosophila_2:1631794_at:256:223; Interrogation_Position=1942; Antisense; AAGGGATCCGTCAATGGTTTCTATA
>probe:Drosophila_2:1631794_at:414:695; Interrogation_Position=1987; Antisense; TTTAATGAAACCAGTCCCTACTCAC
>probe:Drosophila_2:1631794_at:254:33; Interrogation_Position=2093; Antisense; ATAATCAGGTTTCGGCTAGGCGCTA
>probe:Drosophila_2:1631794_at:368:679; Interrogation_Position=2109; Antisense; TAGGCGCTAGTGGACCGATCCTACT
>probe:Drosophila_2:1631794_at:664:651; Interrogation_Position=2135; Antisense; TCAATCTGTCTCTCTTGGAATGGAC
>probe:Drosophila_2:1631794_at:306:585; Interrogation_Position=2150; Antisense; TGGAATGGACTGACTTCACCGGCAC
>probe:Drosophila_2:1631794_at:444:647; Interrogation_Position=2165; Antisense; TCACCGGCACAATCTTCTGGACTTG
>probe:Drosophila_2:1631794_at:480:687; Interrogation_Position=2281; Antisense; TATATAAATGCCTTCTTCCTGCGAA

Paste this into a BLAST search page for me
AACTTTCCATCGCAGAGGTGACTCAAGTGCCTTCTCAGCTACGAGGTGTGGAACGCGATAATCTGGGTCGCTCCGTGGATGCTCATCTCACAGGGCTGGCTCTGCCATATCCGTCGTTTCAGTATTATGCGCCCGGCGATAAGGGATCCGAAGGGATCCGTCAATGGTTTCTATATTTAATGAAACCAGTCCCTACTCACATAATCAGGTTTCGGCTAGGCGCTATAGGCGCTAGTGGACCGATCCTACTTCAATCTGTCTCTCTTGGAATGGACTGGAATGGACTGACTTCACCGGCACTCACCGGCACAATCTTCTGGACTTGTATATAAATGCCTTCTTCCTGCGAA

Full Affymetrix probeset data:

Annotations for 1631794_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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