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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1631856_a_at:

>probe:Drosophila_2:1631856_a_at:404:359; Interrogation_Position=315; Antisense; GCAAGGCCTTCTCCTACTTGATGGT
>probe:Drosophila_2:1631856_a_at:340:329; Interrogation_Position=368; Antisense; GCGGCCAAGGGCCTGGTTAACACCT
>probe:Drosophila_2:1631856_a_at:93:541; Interrogation_Position=382; Antisense; GGTTAACACCTTCATCGGATCGATG
>probe:Drosophila_2:1631856_a_at:168:97; Interrogation_Position=444; Antisense; AGATCAAGCTGTCCGACATCCCGGA
>probe:Drosophila_2:1631856_a_at:235:215; Interrogation_Position=473; Antisense; AAGTCGGTTACTTTCAAGTGGCGCG
>probe:Drosophila_2:1631856_a_at:120:221; Interrogation_Position=488; Antisense; AAGTGGCGCGGAAAGCCCCTGTTCA
>probe:Drosophila_2:1631856_a_at:491:353; Interrogation_Position=522; Antisense; GCACGGCCGCGGAAATCGAGACCGA
>probe:Drosophila_2:1631856_a_at:237:425; Interrogation_Position=539; Antisense; GAGACCGAGCGAAATGTGCCCACAT
>probe:Drosophila_2:1631856_a_at:147:261; Interrogation_Position=565; Antisense; CACGCTGCGCGATCCGGAGGCTGAT
>probe:Drosophila_2:1631856_a_at:613:253; Interrogation_Position=593; Antisense; CAACGTGTGATCAAGCCCGAGTGGC
>probe:Drosophila_2:1631856_a_at:389:591; Interrogation_Position=621; Antisense; TGGTCATCGGAGTGTGCACGCATCT
>probe:Drosophila_2:1631856_a_at:317:41; Interrogation_Position=642; Antisense; ATCTGGGCTGTGTGCCCATCGCGAA
>probe:Drosophila_2:1631856_a_at:613:135; Interrogation_Position=786; Antisense; ACGAGGGTCTTCTCGTGGTCGGCTA
>probe:Drosophila_2:1631856_a_at:722:435; Interrogation_Position=811; Antisense; GAGGAGCTGTTATCGTTTAAGCCCC

Paste this into a BLAST search page for me
GCAAGGCCTTCTCCTACTTGATGGTGCGGCCAAGGGCCTGGTTAACACCTGGTTAACACCTTCATCGGATCGATGAGATCAAGCTGTCCGACATCCCGGAAAGTCGGTTACTTTCAAGTGGCGCGAAGTGGCGCGGAAAGCCCCTGTTCAGCACGGCCGCGGAAATCGAGACCGAGAGACCGAGCGAAATGTGCCCACATCACGCTGCGCGATCCGGAGGCTGATCAACGTGTGATCAAGCCCGAGTGGCTGGTCATCGGAGTGTGCACGCATCTATCTGGGCTGTGTGCCCATCGCGAAACGAGGGTCTTCTCGTGGTCGGCTAGAGGAGCTGTTATCGTTTAAGCCCC

Full Affymetrix probeset data:

Annotations for 1631856_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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