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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632057_at:

>probe:Drosophila_2:1632057_at:376:371; Interrogation_Position=10065; Antisense; GAAGGCCAGGGCAGCAGCTACGATC
>probe:Drosophila_2:1632057_at:75:97; Interrogation_Position=10133; Antisense; AGATACAAGCCTCACGGACGGTTTC
>probe:Drosophila_2:1632057_at:421:567; Interrogation_Position=10216; Antisense; GGCAGCGTCAATTAATGTTCCGATC
>probe:Drosophila_2:1632057_at:102:127; Interrogation_Position=10289; Antisense; AGCCAGCATAACAGCACTAACCGTG
>probe:Drosophila_2:1632057_at:455:23; Interrogation_Position=10334; Antisense; ATATGTCGGTGATGCACGCGGTCGC
>probe:Drosophila_2:1632057_at:630:133; Interrogation_Position=10349; Antisense; ACGCGGTCGCATCTTTTCATGGAGC
>probe:Drosophila_2:1632057_at:216:585; Interrogation_Position=10368; Antisense; TGGAGCGTTACGGAGCAACCTGGTC
>probe:Drosophila_2:1632057_at:397:331; Interrogation_Position=10393; Antisense; GCGGAGTAGCTGACCATTGGCTGAA
>probe:Drosophila_2:1632057_at:229:143; Interrogation_Position=10492; Antisense; ACTGTGGCCAAGTTTTCTGCAACAA
>probe:Drosophila_2:1632057_at:201:221; Interrogation_Position=10515; Antisense; AAGTGCAGTCGCTTCGAGTCGGAAA
>probe:Drosophila_2:1632057_at:698:423; Interrogation_Position=10530; Antisense; GAGTCGGAAATCTCGCGTCTGCGAA
>probe:Drosophila_2:1632057_at:663:497; Interrogation_Position=10546; Antisense; GTCTGCGAATCCTGAAGCCGGTCAG
>probe:Drosophila_2:1632057_at:456:515; Interrogation_Position=10572; Antisense; GTGTGCCAGGCGTGCTACAGTCAGC
>probe:Drosophila_2:1632057_at:465:119; Interrogation_Position=10594; Antisense; AGCTGCGCACGAACTCGTTGGACAA

Paste this into a BLAST search page for me
GAAGGCCAGGGCAGCAGCTACGATCAGATACAAGCCTCACGGACGGTTTCGGCAGCGTCAATTAATGTTCCGATCAGCCAGCATAACAGCACTAACCGTGATATGTCGGTGATGCACGCGGTCGCACGCGGTCGCATCTTTTCATGGAGCTGGAGCGTTACGGAGCAACCTGGTCGCGGAGTAGCTGACCATTGGCTGAAACTGTGGCCAAGTTTTCTGCAACAAAAGTGCAGTCGCTTCGAGTCGGAAAGAGTCGGAAATCTCGCGTCTGCGAAGTCTGCGAATCCTGAAGCCGGTCAGGTGTGCCAGGCGTGCTACAGTCAGCAGCTGCGCACGAACTCGTTGGACAA

Full Affymetrix probeset data:

Annotations for 1632057_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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