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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632118_s_at:

>probe:Drosophila_2:1632118_s_at:390:497; Interrogation_Position=2732; Antisense; GTCTCGGCGAGCATTGTCAACGGGC
>probe:Drosophila_2:1632118_s_at:717:587; Interrogation_Position=2828; Antisense; TGGTTGCAATTCGTTTCGCCAGAAC
>probe:Drosophila_2:1632118_s_at:202:431; Interrogation_Position=2882; Antisense; GAGTACAGTGCCGAGACGTTGTCTA
>probe:Drosophila_2:1632118_s_at:307:105; Interrogation_Position=2895; Antisense; AGACGTTGTCTAACTCCGCAGGACT
>probe:Drosophila_2:1632118_s_at:594:303; Interrogation_Position=2910; Antisense; CCGCAGGACTGCAGTTGTGCCGAAA
>probe:Drosophila_2:1632118_s_at:679:427; Interrogation_Position=2954; Antisense; GAGATTATTGTGCAACAGCCCTGCC
>probe:Drosophila_2:1632118_s_at:267:221; Interrogation_Position=2997; Antisense; AAGTGCTAGTCGACTTCGAGCTGCT
>probe:Drosophila_2:1632118_s_at:413:689; Interrogation_Position=3079; Antisense; TTTGGTTCTGGGTTCGGTGCTCGTC
>probe:Drosophila_2:1632118_s_at:550:649; Interrogation_Position=3111; Antisense; TCACCTTCATCGTCTTTTTGTGCAA
>probe:Drosophila_2:1632118_s_at:250:703; Interrogation_Position=3126; Antisense; TTTTGTGCAATTGTCGCGGCGCCTG
>probe:Drosophila_2:1632118_s_at:390:315; Interrogation_Position=3146; Antisense; GCCTGTCGAAGGAAGCGTAGCCGTT
>probe:Drosophila_2:1632118_s_at:339:675; Interrogation_Position=3163; Antisense; TAGCCGTTAGGCAGATACCGTGACT
>probe:Drosophila_2:1632118_s_at:130:427; Interrogation_Position=3212; Antisense; GAGTTTAGATGGCACAGGCTACCGA
>probe:Drosophila_2:1632118_s_at:383:71; Interrogation_Position=3227; Antisense; AGGCTACCGAACTGTACATTCCATA

Paste this into a BLAST search page for me
GTCTCGGCGAGCATTGTCAACGGGCTGGTTGCAATTCGTTTCGCCAGAACGAGTACAGTGCCGAGACGTTGTCTAAGACGTTGTCTAACTCCGCAGGACTCCGCAGGACTGCAGTTGTGCCGAAAGAGATTATTGTGCAACAGCCCTGCCAAGTGCTAGTCGACTTCGAGCTGCTTTTGGTTCTGGGTTCGGTGCTCGTCTCACCTTCATCGTCTTTTTGTGCAATTTTGTGCAATTGTCGCGGCGCCTGGCCTGTCGAAGGAAGCGTAGCCGTTTAGCCGTTAGGCAGATACCGTGACTGAGTTTAGATGGCACAGGCTACCGAAGGCTACCGAACTGTACATTCCATA

Full Affymetrix probeset data:

Annotations for 1632118_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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