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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632134_s_at:

>probe:Drosophila_2:1632134_s_at:305:127; Interrogation_Position=4105; Antisense; AGCCAGGGACTGAGATCTTTAGGAA
>probe:Drosophila_2:1632134_s_at:439:427; Interrogation_Position=4116; Antisense; GAGATCTTTAGGAACTACTGCACAA
>probe:Drosophila_2:1632134_s_at:603:653; Interrogation_Position=4162; Antisense; TATGGGTTTACCTCGATTGGGATTT
>probe:Drosophila_2:1632134_s_at:256:281; Interrogation_Position=4173; Antisense; CTCGATTGGGATTTGTTTGTTACCT
>probe:Drosophila_2:1632134_s_at:513:77; Interrogation_Position=4196; Antisense; CTTTTACTAACTACGGACTGCCTGC
>probe:Drosophila_2:1632134_s_at:646:289; Interrogation_Position=4209; Antisense; CGGACTGCCTGCAATAAATTTTGTT
>probe:Drosophila_2:1632134_s_at:228:187; Interrogation_Position=4279; Antisense; AACAAAGTTCTATTCAACTCGACAA
>probe:Drosophila_2:1632134_s_at:231:355; Interrogation_Position=4344; Antisense; GCACAGCATACACACTTAACTTTAT
>probe:Drosophila_2:1632134_s_at:590:653; Interrogation_Position=4388; Antisense; TAATTGCGTCAATTGCATCTACCGA
>probe:Drosophila_2:1632134_s_at:393:723; Interrogation_Position=4400; Antisense; TTGCATCTACCGATCTACCATTAGG
>probe:Drosophila_2:1632134_s_at:57:643; Interrogation_Position=4413; Antisense; TCTACCATTAGGCACATTTCATTTG
>probe:Drosophila_2:1632134_s_at:59:453; Interrogation_Position=4444; Antisense; GATCAGTCCAGCAGCGACCAATACT
>probe:Drosophila_2:1632134_s_at:304:283; Interrogation_Position=4504; Antisense; CCGGAACGGACGAGGTCGATCGATT
>probe:Drosophila_2:1632134_s_at:622:435; Interrogation_Position=4515; Antisense; GAGGTCGATCGATTGATTTATTCAA

Paste this into a BLAST search page for me
AGCCAGGGACTGAGATCTTTAGGAAGAGATCTTTAGGAACTACTGCACAATATGGGTTTACCTCGATTGGGATTTCTCGATTGGGATTTGTTTGTTACCTCTTTTACTAACTACGGACTGCCTGCCGGACTGCCTGCAATAAATTTTGTTAACAAAGTTCTATTCAACTCGACAAGCACAGCATACACACTTAACTTTATTAATTGCGTCAATTGCATCTACCGATTGCATCTACCGATCTACCATTAGGTCTACCATTAGGCACATTTCATTTGGATCAGTCCAGCAGCGACCAATACTCCGGAACGGACGAGGTCGATCGATTGAGGTCGATCGATTGATTTATTCAA

Full Affymetrix probeset data:

Annotations for 1632134_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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