FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632222_a_at:

>probe:Drosophila_2:1632222_a_at:210:273; Interrogation_Position=1500; Antisense; CATATTGGTGAAATCGCCTGGGAAC
>probe:Drosophila_2:1632222_a_at:643:541; Interrogation_Position=1531; Antisense; GGATTTTCCTGACCCAAGCGATTGA
>probe:Drosophila_2:1632222_a_at:284:663; Interrogation_Position=1557; Antisense; TAAAGTTTCTCATTTAGGCCACATG
>probe:Drosophila_2:1632222_a_at:646:723; Interrogation_Position=1678; Antisense; TTGACCTAAGCTAATACCCGGTACA
>probe:Drosophila_2:1632222_a_at:93:239; Interrogation_Position=1703; Antisense; AATATCCCAATTTTAATGTGCCATT
>probe:Drosophila_2:1632222_a_at:515:597; Interrogation_Position=1719; Antisense; TGTGCCATTGACTTGAGGTTTACTC
>probe:Drosophila_2:1632222_a_at:630:549; Interrogation_Position=1760; Antisense; GGAGGGCTTATAACTACTTCTACTG
>probe:Drosophila_2:1632222_a_at:398:709; Interrogation_Position=1777; Antisense; TTCTACTGAGCGAAGCCCGAATTTG
>probe:Drosophila_2:1632222_a_at:437:125; Interrogation_Position=1790; Antisense; AGCCCGAATTTGTATGTCTTGTCTT
>probe:Drosophila_2:1632222_a_at:336:497; Interrogation_Position=1805; Antisense; GTCTTGTCTTTAGTCAACTTGATGG
>probe:Drosophila_2:1632222_a_at:385:681; Interrogation_Position=1906; Antisense; TATGTTTACCTGTATGCCTGTGTGA
>probe:Drosophila_2:1632222_a_at:571:317; Interrogation_Position=1921; Antisense; GCCTGTGTGATCGTCTACATCTATA
>probe:Drosophila_2:1632222_a_at:640:375; Interrogation_Position=2025; Antisense; GAAGCATTCAAGCAAACCATTGTTT
>probe:Drosophila_2:1632222_a_at:556:479; Interrogation_Position=2046; Antisense; GTTTCGAAATTTACTGCAACTGCAA

Paste this into a BLAST search page for me
CATATTGGTGAAATCGCCTGGGAACGGATTTTCCTGACCCAAGCGATTGATAAAGTTTCTCATTTAGGCCACATGTTGACCTAAGCTAATACCCGGTACAAATATCCCAATTTTAATGTGCCATTTGTGCCATTGACTTGAGGTTTACTCGGAGGGCTTATAACTACTTCTACTGTTCTACTGAGCGAAGCCCGAATTTGAGCCCGAATTTGTATGTCTTGTCTTGTCTTGTCTTTAGTCAACTTGATGGTATGTTTACCTGTATGCCTGTGTGAGCCTGTGTGATCGTCTACATCTATAGAAGCATTCAAGCAAACCATTGTTTGTTTCGAAATTTACTGCAACTGCAA

Full Affymetrix probeset data:

Annotations for 1632222_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720