FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632231_a_at:

>probe:Drosophila_2:1632231_a_at:611:571; Interrogation_Position=6126; Antisense; GGCTCGCCTTGAAGTGCAGGTGAAC
>probe:Drosophila_2:1632231_a_at:495:509; Interrogation_Position=6145; Antisense; GTGAACCGTCACAAAGAGGCTCTGG
>probe:Drosophila_2:1632231_a_at:666:425; Interrogation_Position=6208; Antisense; GAGATGCAGGCCCAGGATGTAATCA
>probe:Drosophila_2:1632231_a_at:203:51; Interrogation_Position=6259; Antisense; ATGCGCGAAGAGTTCCACGCTGTCT
>probe:Drosophila_2:1632231_a_at:37:551; Interrogation_Position=6297; Antisense; GGAGTCGCTCACAAGGCGCAAGGAC
>probe:Drosophila_2:1632231_a_at:638:525; Interrogation_Position=6354; Antisense; GGGAGCGGCGCTTAAAAACGATCTA
>probe:Drosophila_2:1632231_a_at:513:173; Interrogation_Position=6369; Antisense; AAACGATCTACGACTGGCTTTACAG
>probe:Drosophila_2:1632231_a_at:667:169; Interrogation_Position=6449; Antisense; AAAGTGATGAAAGCCTCAGTTCGGT
>probe:Drosophila_2:1632231_a_at:644:93; Interrogation_Position=6466; Antisense; AGTTCGGTGGGCTCTATCAGTGATC
>probe:Drosophila_2:1632231_a_at:398:43; Interrogation_Position=6497; Antisense; ATCGACTTCGGCCAGTTCATGTAAA
>probe:Drosophila_2:1632231_a_at:643:661; Interrogation_Position=6518; Antisense; TAAAACGCAGCTCACAGCAGTCCTT
>probe:Drosophila_2:1632231_a_at:323:115; Interrogation_Position=6533; Antisense; AGCAGTCCTTGAACGGCAGCATCGG
>probe:Drosophila_2:1632231_a_at:291:439; Interrogation_Position=6563; Antisense; GAGGCGGAAGCGTTGTCAGCTCCAC
>probe:Drosophila_2:1632231_a_at:622:169; Interrogation_Position=6606; Antisense; AAAGGACGACAACAGCCCGAGAAAT

Paste this into a BLAST search page for me
GGCTCGCCTTGAAGTGCAGGTGAACGTGAACCGTCACAAAGAGGCTCTGGGAGATGCAGGCCCAGGATGTAATCAATGCGCGAAGAGTTCCACGCTGTCTGGAGTCGCTCACAAGGCGCAAGGACGGGAGCGGCGCTTAAAAACGATCTAAAACGATCTACGACTGGCTTTACAGAAAGTGATGAAAGCCTCAGTTCGGTAGTTCGGTGGGCTCTATCAGTGATCATCGACTTCGGCCAGTTCATGTAAATAAAACGCAGCTCACAGCAGTCCTTAGCAGTCCTTGAACGGCAGCATCGGGAGGCGGAAGCGTTGTCAGCTCCACAAAGGACGACAACAGCCCGAGAAAT

Full Affymetrix probeset data:

Annotations for 1632231_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720