FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632260_s_at:

>probe:Drosophila_2:1632260_s_at:472:393; Interrogation_Position=3353; Antisense; GAAATTGTTAACTGCGTTGTGGCGC
>probe:Drosophila_2:1632260_s_at:656:473; Interrogation_Position=3359; Antisense; GTTAACTGCGTTGTGGCGCCAAAGT
>probe:Drosophila_2:1632260_s_at:89:523; Interrogation_Position=3371; Antisense; GTGGCGCCAAAGTATTTTTCAAAGC
>probe:Drosophila_2:1632260_s_at:479:387; Interrogation_Position=3438; Antisense; GAAAATGTAACTTGTGCACCAACCA
>probe:Drosophila_2:1632260_s_at:444:509; Interrogation_Position=3451; Antisense; GTGCACCAACCAAGAGATAAAACAT
>probe:Drosophila_2:1632260_s_at:362:523; Interrogation_Position=3533; Antisense; GGGCGCAGTCCAACGTAAAAAACAT
>probe:Drosophila_2:1632260_s_at:155:179; Interrogation_Position=3552; Antisense; AAACATTCGAAATTCCGCTCGTAGT
>probe:Drosophila_2:1632260_s_at:279:9; Interrogation_Position=3563; Antisense; ATTCCGCTCGTAGTGAGAAACATTT
>probe:Drosophila_2:1632260_s_at:136:723; Interrogation_Position=3639; Antisense; TTGAAACCCAAGTGAACAACTAACT
>probe:Drosophila_2:1632260_s_at:647:385; Interrogation_Position=3652; Antisense; GAACAACTAACTAATTTATCCAGCT
>probe:Drosophila_2:1632260_s_at:113:687; Interrogation_Position=3720; Antisense; TATTCATTACGAAAATCTTAACCCA
>probe:Drosophila_2:1632260_s_at:683:167; Interrogation_Position=3763; Antisense; AAATGTTCTTGATGTTAGAGGGCAA
>probe:Drosophila_2:1632260_s_at:433:695; Interrogation_Position=3842; Antisense; TTAGCTTAACATTTTACTGAAAGGT
>probe:Drosophila_2:1632260_s_at:462:651; Interrogation_Position=3886; Antisense; TCAAGCGGTTTCAAAGATTTACAAA

Paste this into a BLAST search page for me
GAAATTGTTAACTGCGTTGTGGCGCGTTAACTGCGTTGTGGCGCCAAAGTGTGGCGCCAAAGTATTTTTCAAAGCGAAAATGTAACTTGTGCACCAACCAGTGCACCAACCAAGAGATAAAACATGGGCGCAGTCCAACGTAAAAAACATAAACATTCGAAATTCCGCTCGTAGTATTCCGCTCGTAGTGAGAAACATTTTTGAAACCCAAGTGAACAACTAACTGAACAACTAACTAATTTATCCAGCTTATTCATTACGAAAATCTTAACCCAAAATGTTCTTGATGTTAGAGGGCAATTAGCTTAACATTTTACTGAAAGGTTCAAGCGGTTTCAAAGATTTACAAA

Full Affymetrix probeset data:

Annotations for 1632260_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720