Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632272_a_at:

>probe:Drosophila_2:1632272_a_at:340:201; Interrogation_Position=2739; Antisense; AACGCCGCATGGAGAAGCAGCGCCA
>probe:Drosophila_2:1632272_a_at:384:113; Interrogation_Position=2754; Antisense; AGCAGCGCCAGGACGACTTGGATAA
>probe:Drosophila_2:1632272_a_at:195:147; Interrogation_Position=2769; Antisense; ACTTGGATAAGGAGCGCACCACCCG
>probe:Drosophila_2:1632272_a_at:255:69; Interrogation_Position=2820; Antisense; AGGCCGAGACGCTCAGGAAGCTGCA
>probe:Drosophila_2:1632272_a_at:220:213; Interrogation_Position=2847; Antisense; AAGAGGATTCCGTGGACCCGGATGC
>probe:Drosophila_2:1632272_a_at:527:347; Interrogation_Position=2876; Antisense; GCATCCGCCGGAAGTGCGTCCAAAA
>probe:Drosophila_2:1632272_a_at:710:357; Interrogation_Position=2928; Antisense; GCAAACGCGATTCCAGCTCAGAGAA
>probe:Drosophila_2:1632272_a_at:600:309; Interrogation_Position=2940; Antisense; CCAGCTCAGAGAATCGGCATCGCGA
>probe:Drosophila_2:1632272_a_at:649:205; Interrogation_Position=2969; Antisense; AAGCGCAAGCATAAGAAGTCCAAAA
>probe:Drosophila_2:1632272_a_at:427:217; Interrogation_Position=2993; Antisense; AAGTCCTCGGGTCGATCCGATAACG
>probe:Drosophila_2:1632272_a_at:415:725; Interrogation_Position=3044; Antisense; TTGATATACCCCAAACGGTGGCCGA
>probe:Drosophila_2:1632272_a_at:416:261; Interrogation_Position=3082; Antisense; CACCAGTTTCAGGTGGAACTTTCAA
>probe:Drosophila_2:1632272_a_at:423:719; Interrogation_Position=3108; Antisense; TTGCAATTGTAAAAATCGCGACCCC
>probe:Drosophila_2:1632272_a_at:307:301; Interrogation_Position=3130; Antisense; CCCCAATTTTGTAGCCAAGTCTGTT

Paste this into a BLAST search page for me
AACGCCGCATGGAGAAGCAGCGCCAAGCAGCGCCAGGACGACTTGGATAAACTTGGATAAGGAGCGCACCACCCGAGGCCGAGACGCTCAGGAAGCTGCAAAGAGGATTCCGTGGACCCGGATGCGCATCCGCCGGAAGTGCGTCCAAAAGCAAACGCGATTCCAGCTCAGAGAACCAGCTCAGAGAATCGGCATCGCGAAAGCGCAAGCATAAGAAGTCCAAAAAAGTCCTCGGGTCGATCCGATAACGTTGATATACCCCAAACGGTGGCCGACACCAGTTTCAGGTGGAACTTTCAATTGCAATTGTAAAAATCGCGACCCCCCCCAATTTTGTAGCCAAGTCTGTT

Full Affymetrix probeset data:

Annotations for 1632272_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime