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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1632275_a_at:

>probe:Drosophila_2:1632275_a_at:347:309; Interrogation_Position=3294; Antisense; CCAGCTCCGGTTCGTTAGTTATTAG
>probe:Drosophila_2:1632275_a_at:708:101; Interrogation_Position=3321; Antisense; AGACGGGATCTCTAGATCGGACGAA
>probe:Drosophila_2:1632275_a_at:662:635; Interrogation_Position=3378; Antisense; TCGATGACGGGCCACGTGTTTCCGA
>probe:Drosophila_2:1632275_a_at:134:259; Interrogation_Position=3390; Antisense; CACGTGTTTCCGACCGAGTGGAGGA
>probe:Drosophila_2:1632275_a_at:307:423; Interrogation_Position=3413; Antisense; GAGACACGGGTCAATCCAGACTCAT
>probe:Drosophila_2:1632275_a_at:679:73; Interrogation_Position=3456; Antisense; AGGACACTAAACTTGATCAGCTGGA
>probe:Drosophila_2:1632275_a_at:331:563; Interrogation_Position=3481; Antisense; GGAATCCGCAGAAACCTCAGGCCTT
>probe:Drosophila_2:1632275_a_at:621:175; Interrogation_Position=3492; Antisense; AAACCTCAGGCCTTCAACTGTACAT
>probe:Drosophila_2:1632275_a_at:502:711; Interrogation_Position=3504; Antisense; TTCAACTGTACATCGCTCGCGATGG
>probe:Drosophila_2:1632275_a_at:450:281; Interrogation_Position=3535; Antisense; CTCCCTGGGCGGACATGAGGTTAAA
>probe:Drosophila_2:1632275_a_at:80:165; Interrogation_Position=3557; Antisense; AAATCAAGCGTACGAGCGGGCGCCC
>probe:Drosophila_2:1632275_a_at:563:289; Interrogation_Position=3573; Antisense; CGGGCGCCCTAAAGCAGGTGGTAAT
>probe:Drosophila_2:1632275_a_at:215:97; Interrogation_Position=3608; Antisense; AGATAGTAGTATCCGAGACTCACAA
>probe:Drosophila_2:1632275_a_at:136:425; Interrogation_Position=3622; Antisense; GAGACTCACAACTCCTTTTTAAAAT

Paste this into a BLAST search page for me
CCAGCTCCGGTTCGTTAGTTATTAGAGACGGGATCTCTAGATCGGACGAATCGATGACGGGCCACGTGTTTCCGACACGTGTTTCCGACCGAGTGGAGGAGAGACACGGGTCAATCCAGACTCATAGGACACTAAACTTGATCAGCTGGAGGAATCCGCAGAAACCTCAGGCCTTAAACCTCAGGCCTTCAACTGTACATTTCAACTGTACATCGCTCGCGATGGCTCCCTGGGCGGACATGAGGTTAAAAAATCAAGCGTACGAGCGGGCGCCCCGGGCGCCCTAAAGCAGGTGGTAATAGATAGTAGTATCCGAGACTCACAAGAGACTCACAACTCCTTTTTAAAAT

Full Affymetrix probeset data:

Annotations for 1632275_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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